Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04088 ATGGTTAAGTTGACTATGATTGCCCGTGTTACTGATGGTCTTCCATTAGCTGAAGGAATGGATGATGCTCGCGATCTTAAAGATGGTGAACTTTACAAACAGCAAGTCAAGTCTTTGTTTAAGAATCTATCAAGAGGGCATAATGAGGCATCAAGGATGTCAGTTGAAAGTGGTCCTTATGTTTTTCATTATATTATAGAAGGACGGGTCTGTTACTTGACAATGTGTGATCGGGCATACCCCAAGAAACTAGCATTTCAGTATCTTGAAGAGCTCAGGAATGAGTTTGAGCGTGTTAATGGGTCTCAAATTGAAACTGCTGCCAGACCATATGCCTTCATTAAGTTTGACGCATTTATACAGAAGACAAAGAAACTTTACCAGGATACCCAGACACAGCGTAATATTTCAAAGTTGAATGATGAACTTTATGAAGTCCACCAGATTATGACTCGTAATGTGCAGGAAGTTCTTGGTGTTGGTGAACAGTTGGATCAGGTCAGCCAATTGTCCAGTCGCTTATCATCAGAATCTCGCATATATGCTGACAAGGCTAGAGATTTAAATAGACAGGCTCTGATTCGGAAATGGGCCCCTGTTGCTATTGTTTTTGGAGTTGTCTTTGTACTTTTCTGGCTCAAGAACAAAATTTGGTGA 657 0.4018 MVKLTMIARVTDGLPLAEGMDDARDLKDGELYKQQVKSLFKNLSRGHNEASRMSVESGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEELRNEFERVNGSQIETAARPYAFIKFDAFIQKTKKLYQDTQTQRNISKLNDELYEVHQIMTRNVQEVLGVGEQLDQVSQLSSRLSSESRIYADKARDLNRQALIRKWAPVAIVFGVVFVLFWLKNKIW 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04088 218 Gene3D - 130 214 - -
Mepo1g04088 218 SUPERFAMILY SNARE fusion complex 130 197 - -
Mepo1g04088 218 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 135 195 IPR042855 -
Mepo1g04088 218 CDD R-SNARE_SEC22 133 196 - -
Mepo1g04088 218 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 218 IPR044565 GO:0005484|GO:0006888|GO:0006890
Mepo1g04088 218 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Mepo1g04088 218 ProSiteProfiles Longin domain profile. 6 120 IPR010908 -
Mepo1g04088 218 FunFam 25.3 kDa vesicle transport protein-like 1 128 - -
Mepo1g04088 218 CDD Longin 5 127 IPR010908 -
Mepo1g04088 218 Pfam Synaptobrevin 133 213 IPR042855 -
Mepo1g04088 218 Pfam Regulated-SNARE-like domain 37 117 IPR010908 -
Mepo1g04088 218 SMART Longin_2 35 119 IPR010908 -
Mepo1g04088 218 FunFam 25.3 kDa vesicle transport protein-like 131 215 - -
Mepo1g04088 218 Gene3D Longin domain 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04088 Mepo-Chr1 47515311 47523955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04088 46 210 Miscellaneous Gene Families AT5G11150 21.818 5.62e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04088 K08517 - gmx:100795552 397.127