Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3870 ATGACCTTGACACAAACAAGTTATATTATAGAAGGACGGGTCTGTTACTTGACAATGTGTGATCGGGCATACCCTAAGAAACTAGCATTTCAATATCTTGAAGAGCTCAGGAATGAGTTTGAGCGTGTTAATGGGGCTCAAATCGAAACTGCTGCCAGACCTTATGCCTTCATTAAGTTTGACACGTTTATACAGAAGACAAAGAAACTTTACCAGGATACCCATACACAGCGCAATATTGCAAAATTGAATGATGAACTTTATGAAGTCCACCAGATTATGACTCGAAATGTGCAGGAAGTTCTTGGTGTTGGTGAACAGTTGGATCAGGTCAGCCAAATGTCCAGTCGCCTATCATCAGAATCTCGCATATATGCTGACAAGGCCAAAGATTTAAATAGACAGGCTCTGATTCGAAAATGGGCTCCTGTTGCTATTGTTTTTGGAGTTGTCTTTCTGCTTTTCTGGCTCAAAAACAAAATTTGGTGA 489 0.4029 MTLTQTSYIIEGRVCYLTMCDRAYPKKLAFQYLEELRNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTHTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEQLDQVSQMSSRLSSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWLKNKIW* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3870 162 ProSiteProfiles Longin domain profile. 1 64 IPR010908 -
Psa4g3870 162 Pfam Synaptobrevin 77 157 IPR042855 -
Psa4g3870 162 Gene3D - 74 158 - -
Psa4g3870 162 PANTHER BNAA09G47480D PROTEIN 8 162 - -
Psa4g3870 162 CDD Longin 8 71 IPR010908 -
Psa4g3870 162 SMART Longin_2 1 63 IPR010908 -
Psa4g3870 162 Pfam Regulated-SNARE-like domain 7 62 IPR010908 -
Psa4g3870 162 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 79 139 IPR042855 -
Psa4g3870 162 CDD R-SNARE_SEC22 77 140 - -
Psa4g3870 162 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 8 162 IPR044565 GO:0005484|GO:0006888|GO:0006890
Psa4g3870 162 Gene3D Longin domain 3 71 - -
Psa4g3870 162 SUPERFAMILY SNARE fusion complex 74 141 - -
Psa4g3870 162 SUPERFAMILY SNARE-like 7 72 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3870 Psa-Chr4 323529647 323538076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3870 16 157 Miscellaneous Gene Families AT5G22360 20.690 1.36e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3870 K08517 - gmx:100795552 295.049