Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04077 ATGGTAAAGTTGACTATGATTGCTCGTGTTACTGATGGTCTTCCATTGGCTGAAGGACTAGATGATGGCCGCGATCTTAAAGATGGTGAATTTTACAAACAGCAAGTCAAGGCTTTGTTTAAGAATCTATCAAGAGGGCATAATGAGGCGTCGAGGATGTCAGTTGAAAGTGGTCCTTACATTTTCCATTATATTATAGAAGGACGGGTATGTTACTTGACAATGTGTGATCGAGCATACCCTAAGAAACTAGCATTTCAATATCTTGAAGAGCTCAGAAATGAGTTTGAGCGTGTTAATGGGGCTCAAATCGAGACTGCTGCCAGACCTTATGCATTCATAAAGTTTGACACATTTATACAGAAGACTAAGAAACTTTACCAGGATACCCATACACAGCGCAATATTGCAAAGTTGAATGATGAACTCTATGAAGTCCACCAGATTATGACTCGAAATGTGCAGGAAGTTCTTGGTGTTGGTGAACAGTTGGATCAGGTCAGCCAAATGTCCAGTCGCCTATCATCAGAATCTCGCATATATGCTGACAAGGCCAAAGATTTAAATAGACAGGCTCTAATTCGAAAATGGGCCCCTGTTGCTATTGTTTTTGGAGTTGTCTTTCTGCTTTTCTGGCTCAAGAACAAAATTTGGTGA 657 0.4049 MVKLTMIARVTDGLPLAEGLDDGRDLKDGEFYKQQVKALFKNLSRGHNEASRMSVESGPYIFHYIIEGRVCYLTMCDRAYPKKLAFQYLEELRNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTHTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEQLDQVSQMSSRLSSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWLKNKIW 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04077 218 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Vivi7g04077 218 SMART Longin_2 35 119 IPR010908 -
Vivi7g04077 218 ProSiteProfiles Longin domain profile. 6 120 IPR010908 -
Vivi7g04077 218 CDD R-SNARE_SEC22 133 196 - -
Vivi7g04077 218 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 218 IPR044565 GO:0005484|GO:0006888|GO:0006890
Vivi7g04077 218 FunFam 25.3 kDa vesicle transport protein-like 131 215 - -
Vivi7g04077 218 CDD Longin 5 127 IPR010908 -
Vivi7g04077 218 Gene3D Longin domain 1 127 - -
Vivi7g04077 218 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 135 195 IPR042855 -
Vivi7g04077 218 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Vivi7g04077 218 FunFam 25.3 kDa vesicle transport protein-like 1 128 - -
Vivi7g04077 218 Pfam Synaptobrevin 133 213 IPR042855 -
Vivi7g04077 218 Gene3D - 131 214 - -
Vivi7g04077 218 SUPERFAMILY SNARE fusion complex 130 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04077 Vivi-Chr7 107367926 107373025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04077 46 210 Miscellaneous Gene Families AT5G11150 20.606 6.19e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04077 K08517 - gmx:100795552 412.92