Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1309 ATGGCGACCAAAGATTCTCCTATGGAACTGCTCGATAGCACCACCGAATCCGAAGGATCCGACCCGGATTCCGACTGTGATGATTCGGGAGAAGACCCCGATTACGACGCGCTCGAAGAAACACATAGCAAGTTCTCAAACCTCTCACTTAAGCACAAGGCAAAAGCGCGCTTTATCGAGGAGAAGGGTCAAGGTGAGGAAGTGTTGGAGGTCACTGCATCTGTAAATGATGGAGAGAGTTTTGGAAAAGTTCAAAAGTTATTCGAAGAGGGATTGTTGAAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTTAGGCTAACTGGAAATAAGGACACGCTTATACAACGCATAAAGGAGCACTTTGAGATTTTAAATGGAGGGGAGCAAAGGTATCCGCCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATCGCATCCAGGAGTGCTAGTGGTCCACCTTGTGGCACAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGCTGAAGACTATGAGACAGAAATGGGAAGATGAAGCAAAGAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATATCTTGCTAGGGCAGATAGAGAATCAAGGATTCAAGAAAAGGAGAAGAGGAAAATTAATAAGGAAAATAGGGTCTACAAAAAGGAAGCAAGGAACCAATGTCAACCTCAAGCAACAAATGTAGTCATTAATCCAGGAAAACCCGAATTTCCATCTCGAAATTCAGGTTTATCTGTCAATATAATGAACGAAAGGTCCTCTATTTTAAATAATCCAGCAGCAACTTTAGGAAGAACATCATTTGCTGTTCATAGTATGCCTAATCAGCAAGCTATAATTGGTGGTGTGAGGGGAGCTGAACTTGGTGCAAACTATAATTATGCAGACCCCCATTTCAGAGAAAACCTACCAGTTATTGTGAATTGCAACC 1132 0.4231 MATKDSPMELLDSTTESEGSDPDSDCDDSGEDPDYDALEETHSKFSNLSLKHKAKARFIEEKGQGEEVLEVTASVNDGESFGKVQKLFEEGLLKKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHFEILNGGEQRYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGTRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTMRQKWEDEAKRQKILMEKHSRGYLARADRESRIQEKEKRKINKENRVYKKEARNQCQPQATNVVINPGKPEFPSRNSGLSVNIMNERSSILNNPAATLGRTSFAVHSMPNQQAIIGGVRGAELGANYNYADPHFRENLPVIVNCN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1309 377 Coils Coil 256 276 - -
Pvu10g1309 377 MobiDBLite consensus disorder prediction 1 40 - -
Pvu10g1309 377 SUPERFAMILY SAP domain 83 128 IPR036361 -
Pvu10g1309 377 Pfam SAP domain 93 127 IPR003034 -
Pvu10g1309 377 ProSiteProfiles IQ motif profile. 241 270 IPR000048 GO:0005515
Pvu10g1309 377 SMART sap_9 93 127 IPR003034 -
Pvu10g1309 377 MobiDBLite consensus disorder prediction 16 35 - -
Pvu10g1309 377 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Pvu10g1309 377 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 6 297 IPR045124 GO:0003723|GO:0045892
Pvu10g1309 377 Gene3D SAP domain 93 131 IPR036361 -
Pvu10g1309 377 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 6 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1309 Pvu-Chr10 39580185 39582947 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1309 - - pvu:PHAVU_010G1258000 711.835