Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g01647 ATGGTGAAGTTGACTATGATTGCCCGTGTTACTGATGGTCTTCCCCTAGCTGAAGGACTGGATGATGGTCGTGATCTTAAAGATGCGGAATATTACAAACAGCAAGTCAAGGCTTTGTTTAAGAATCTCTCAAGAGGACATTATGAAGCATCAAGGATGTCAGTTGAAACTGGACCTTATGTTTTTCATTATATTATAGAAGGACGGGTCTGTTACTTAACAATGTGTGATCGTGCATACCCTAAGAAACTAGCCTTTCAATATCTTGAAGAGCTCAGGAACGAGTTTGAGCGTGTTAATGGGTCTCAAATTGAAACTGCAGCCAGACCTTATGCCTTCATCAAGTTTGATACATTTATACAGAAGACAAAGAAACTTTACCAGGATACGCATACTCAGCGCAATATTTCTAAATTGAATGATGAACTCTATGAAGTCCACCAGATAATGACTCGTAATGTGCAGGATGTTCTTGGTGTTGGTGAACAGTTGGACCAGGTCAGCCAAATGTCCAGTCGCTTATCATCAGAATCTCGCGTATATGCTGATAAGGCTAGAGATTTAAATCGGCAGGCTCTGATTCGGAAGTGGGCCCCTGTTGCAATTGTTTTTGGAGTTGTCTTCGTACTTTTCTGGATCAAAAATAAAATATGGTGA 657 0.4049 MVKLTMIARVTDGLPLAEGLDDGRDLKDAEYYKQQVKALFKNLSRGHYEASRMSVETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEELRNEFERVNGSQIETAARPYAFIKFDTFIQKTKKLYQDTHTQRNISKLNDELYEVHQIMTRNVQDVLGVGEQLDQVSQMSSRLSSESRVYADKARDLNRQALIRKWAPVAIVFGVVFVLFWIKNKIW* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g01647 218 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Phac10g01647 218 FunFam 25.3 kDa vesicle transport protein-like 131 215 - -
Phac10g01647 218 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 135 195 IPR042855 -
Phac10g01647 218 SUPERFAMILY SNARE fusion complex 130 197 - -
Phac10g01647 218 ProSiteProfiles Longin domain profile. 6 120 IPR010908 -
Phac10g01647 218 SMART Longin_2 35 119 IPR010908 -
Phac10g01647 218 CDD R-SNARE_SEC22 133 196 - -
Phac10g01647 218 Pfam Synaptobrevin 133 213 IPR042855 -
Phac10g01647 218 CDD Longin 5 127 IPR010908 -
Phac10g01647 218 Gene3D - 131 215 - -
Phac10g01647 218 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 218 IPR044565 GO:0005484|GO:0006888|GO:0006890
Phac10g01647 218 Gene3D Longin domain 1 127 - -
Phac10g01647 218 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Phac10g01647 218 FunFam 25.3 kDa vesicle transport protein-like 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g01647 Phac-Chr10 39488528 39493611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g01647 46 210 Miscellaneous Gene Families AT5G11150 21.818 3.89e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g01647 K08517 - gmx:100795552 420.239