Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g02001 ATGAGAAAACGTATCAGTATGGAAAGTGATGCCGACTTCTTCAATTCCTTTGCCACATCCTCCTCCTCCTCCACTTCCACTTCCTCCACTTCCACTTCTATCACCACCACCACCACAACCCCTTCAATCTTCATTGACACCAACACTTCTAGCACATCATCATCATCATCATCTTTAACACTCTCCACATCTTCTACCTCAAACTCAGATTCAAGCACCAAAGAACACTCCAAAACCCCTCAAAATGACTCAACAACTCCTCAAACCTCGTTGGAAAATGAGAAGGACTCAAAGGGGTGCAAGAAGAGGCAGAGGGAGAATCCCAGCAATCAGAACTACCCTACTTATAGGGGTGTGAGGATGAGGAACTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCAAGGAAGAAGTCAAGAATTTGGCTTGGAACATACCCTACAGCAGAAATGGCTGCTAGAGCACATGATGTGGCTGCCTTAGCCATCAAGGGCCATTCTGCATACCTCAATTTCCCTGAATTGGCTCAAGAACTTCCAAGGCCAGCTACCACATCACCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACATCCTTTGAGGTGGTTAAGCATTGCCAAAGTACTACTACTATTGAAGATGGAGAAGAAGGAGAAGAACCAAACCAAACAGAACATGCCTCATCTTCAACTCTCTCAATGGACAACACACAAGAATCTTCAAGCTCTCACTCTACCAATGATGATGACACTTTGTTTGACCTACCAGATCTTTTCCCTGATCAACTTTGCTCCTATTCTTCTTCTTGGCATTTGTGTGCAGTTAATAGTGGATTTAGGCTTGAGGAGTCACTTTTTTGGGAGAATTATTAG 876 0.4452 MRKRISMESDADFFNSFATSSSSSTSTSSTSTSITTTTTTPSIFIDTNTSSTSSSSSSLTLSTSSTSNSDSSTKEHSKTPQNDSTTPQTSLENEKDSKGCKKRQRENPSNQNYPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPATTSPKDIQAAAAKAANTSFEVVKHCQSTTTIEDGEEGEEPNQTEHASSSTLSMDNTQESSSSHSTNDDDTLFDLPDLFPDQLCSYSSSWHLCAVNSGFRLEESLFWENY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g02001 291 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Phco1g02001 291 MobiDBLite consensus disorder prediction 16 93 - -
Phco1g02001 291 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677
Phco1g02001 291 FunFam Ethylene-responsive transcription factor 2 115 173 - -
Phco1g02001 291 MobiDBLite consensus disorder prediction 16 117 - -
Phco1g02001 291 MobiDBLite consensus disorder prediction 209 250 - -
Phco1g02001 291 CDD AP2 116 174 IPR001471 GO:0003700|GO:0006355
Phco1g02001 291 Pfam AP2 domain 114 165 IPR001471 GO:0003700|GO:0006355
Phco1g02001 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 81 263 - -
Phco1g02001 291 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Phco1g02001 291 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Phco1g02001 291 MobiDBLite consensus disorder prediction 225 250 - -
Phco1g02001 291 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700|GO:0006355
Phco1g02001 291 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g02001 Phco-Chr1 59705868 59706743 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g02001 AP2 3.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g02001 1 59705868 59706743 Phco1g02001 1 59705868 59706743 ECH