Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0616 Acco13g0975 . Accr12g00943 . . . . . . . . . . . Alju13g1180 . . . . . . . Bach2g01752 . Bisa02g0399 . . . . . . . Dere14g0160 . . . Enph5g0783 . Glsi13g0881 . . . . . . . . . . . . . . . . . . . . . Lapu9g00272 . . . Lele17g0731 Lele18g0790 Lele19g0827 Lele20g0630 . . . . . . . . Mepo6g02129 . . . Mibi13g0943 . . . . . Phco7g02528 . Prci9g1195 . . . Pste2g01007 . Pte3g00500 . . . . . Pvu9g2189 . . . . . Spst9g02683 . . . . . . . Trre3g03284 . . . . . . . Vimu10g00675 . . . Vivi4g01217 . . .
Vvi4g0617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0619 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0614 Chr4 6129271 6137870 +
Vvi Vvi4g0615 Chr4 6145587 6149666 +
Vvi Vvi4g0616 Chr4 6154009 6156335 +
Acco Acco13g0975 Chr13 7853472 7855715 -
Accr Accr12g00943 Chr12 9870529 9872781 -
Alju Alju13g1180 Chr13 30526628 30528891 +
Bach Bach2g01752 Chr2 25880173 25882438 +
Bisa Bisa02g0399 Chr02 6729913 6735104 +
Dere Dere14g0160 Chr14 1676848 1679114 +
Enph Enph5g0783 Chr5 6448700 6452294 -
Glsi Glsi13g0881 Chr13 27191869 27194142 +
Lapu Lapu9g00272 Chr9 2653374 2661021 +
Lele Lele17g0731 Chr17 18999667 19001977 +
Lele Lele18g0790 Chr18 4955247 4959336 -
Lele Lele19g0827 Chr19 4991380 4994961 -
Lele Lele20g0630 Chr20 13549454 13551785 +
Mepo Mepo6g02129 Chr6 25397150 25402850 -
Mibi Mibi13g0943 Chr13 12085091 12087493 -
Phco Phco7g02528 Chr7 44084796 44089084 +
Prci Prci9g1195 Chr9 25940022 25944622 +
Pste Pste2g01007 Chr2 10708300 10712738 +
Pte Pte3g00500 Chr3 3966213 3968777 -
Pvu Pvu9g2189 Chr9 31430120 31439096 +
Spst Spst9g02683 Chr9 60909119 60911400 +
Trre Trre3g03284 Chr3 41066098 41068347 -
Vimu Vimu10g00675 Chr10 5777009 5779265 -
Vivi Vivi4g01217 Chr4 38647223 38652537 -
Vvi Vvi4g0617 Chr4 6188242 6199063 +
Psa Psa6g0640 Chr6 21689093 21692799 -
Vvi Vvi4g0618 Chr4 6201406 6209544 -
Vvi Vvi4g0619 Chr4 6237453 6238322 +
Vvi Vvi4g0620 Chr4 6251294 6252646 -
Vvi Vvi4g0621 Chr4 6257828 6258502 +
Vvi Vvi4g0622 Chr4 6258507 6261202 +
Vvi Vvi4g0623 Chr4 6276806 6283019 +
Acco Acco13g0975 Chr13 7853472 7855715 -
Accr Accr12g00943 Chr12 9870529 9872781 -
Alju Alju13g1180 Chr13 30526628 30528891 +
Bach Bach2g01752 Chr2 25880173 25882438 +
Bisa Bisa02g0399 Chr02 6729913 6735104 +
Dere Dere14g0160 Chr14 1676848 1679114 +
Enph Enph5g0783 Chr5 6448700 6452294 -
Glsi Glsi13g0881 Chr13 27191869 27194142 +
Lapu Lapu9g00272 Chr9 2653374 2661021 +
Lele Lele17g0731 Chr17 18999667 19001977 +
Lele Lele18g0790 Chr18 4955247 4959336 -
Lele Lele19g0827 Chr19 4991380 4994961 -
Lele Lele20g0630 Chr20 13549454 13551785 +
Mepo Mepo6g02129 Chr6 25397150 25402850 -
Mibi Mibi13g0943 Chr13 12085091 12087493 -
Phco Phco7g02528 Chr7 44084796 44089084 +
Prci Prci9g1195 Chr9 25940022 25944622 +
Pste Pste2g01007 Chr2 10708300 10712738 +
Pte Pte3g00500 Chr3 3966213 3968777 -
Pte Pte3g00500 Chr3 3966213 3968777 -
Pvu Pvu9g2189 Chr9 31430120 31439096 +
Spst Spst9g02683 Chr9 60909119 60911400 +
Trre Trre3g03284 Chr3 41066098 41068347 -
Vimu Vimu10g00675 Chr10 5777009 5779265 -
Vivi Vivi4g01217 Chr4 38647223 38652537 -
Pte Pte3g00500 Chr3 3966213 3968777 -