Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02528 ATGTGGAAGAAAAAGAATCAGGTAGGAGAAACGAGTGAAGATAGAGGAGATCATAAGAAAGCAGAAGATGAAAGCCCCAGATCATATGACAGCGATACCTTGGTGCTTATATCAATGGCTCAAGTGTTGAAGGATGAAGGGAACAAGCTGTTCCAGAAGCGGAATGTTGAGGGGGCTTTGGTAAAATATGAGAAGGCCCTGAAATTGCTTCCAAGAAATCATGTAGATATTTCTTATTTAAGGAGTAACATGGCTGCGTGCTACATGCAGATGGGTCTCCGTGAGTATCCTAAAGCAATCAATGAATGCAATTTGGCTCTTGAAGTAACACCAAAATATAGTAAAGCTCTGATGAAGAGAGCAAGGTGTTATGAAGCTTTAAATAGGCTGGATTTTGCGCTGAGAGATGTTAGTACTGTTTTGAAGATAGAGCCAAATAATGTAATGGCATTGGAGGTCTCAGATAAGGTGAAGCATGCTCTTGAAGATCGGGGATTAGTTGTAAATGATACAGAAATTGAGTTGCCTCCAGACTATGCCGGACCTCCTATTTTACCTCTGAAAAAAGTGAAAGAAAAGATTCACAAGAAGAAGAAAAACAAAGAGAAGGTGAAGTCTCTTGATAAAATTGAAGAAAAGCAAGCTGAGGAGAATTTAGAAGAGAATACAGCTGAGGACAGCAGTGTAGTAAAGAAGGCCGAGGACAGTCGGAAAGAGAAGAAGGCTAACAAATCTAAAAAGAAGAAGGCCAAGGGAAAAACTGTTGAGAAAAAGGATGATGTTAAGGAAGTTATTGAGGAAAAAAGTACTGGTAGAAGTGAAGATATACCTAAGAAAGCAGCAAAACTTGTTTTTGGTGAGGATATAAGATGGGCCGAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGGGAAGTTATTTGTGAACGTTTCCCTAGATTAGGAGCAGTTCTTGTCAAATATAAGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGACGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATCCGGCTGTACATAGTGGAAGTTAATCCTGAACATGATCCATTCTTTGAGAAGCTTAATACAAAGAATGTAGAAAAGGTTAGTATTGCTAATTCTCCTGTGAATGGATCTGTGGTGAAAGGAAAGGACATTATTAGCTTATCTTGCATTGAGGATTGGATAATTCGGTTTGCACAACTGTTCAAGAACCATGTTGGGTTGGAACCAGACAGATATTTATATTTTCATAAATTTGGTATGAAGCTCTATTCAGAGGCTGTGGAGGAGACAATTATGAGCGAGGAAGCTCAAGGCGTATTTGATGTTGCTGGAGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCGAGGGCAAGGCAGAGAGTTTATTTTACAGGAGATTCTTCTAAGGAGCATTTGCATGAACAAATCAGAAGTTTGTATGAATGGGCACACGAAGAATATGAAAAATCTGGGGAGAAGTATGAAACAGCCATTGAAATTAAACCAGATTTTTATGAAGGCTTCTTGGCACTAGGCCAACAGCTGTTTGAGCAAGCCAAACTTTCTTGGAATTATGCACTCTGTTCGAAGGTAGATTTATCGACATGGCCCTCCTCTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAGTGTAGAGAAAGGAATGCTTATATGGGAAGAATCAGGAGAGCAGCAGTTGCAGGAAATTTCCAATCCGAAGGATATTTTATTACATTTGCAGGACATGGGGTTGGACCAACTATTCAAAAATATGTCAGCAGATGAAATTGCTACACAGGTGGACAATACGAGGTCTCAAATGAATCTTCTGTGGGGTACCATACTATATGAGCGCTCAATAGTGGAATTCAAGTTAGGGTTACTGGAATGGAATGAAAGTCTTGAAGTTGCAGTTGAGAAGTTTCAACTTGCTGGAGCTTCTGCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATTACGGTCTTGGATTCAAAATTGATGAAATAGTCCGACCATGGAATGAGATGTACAACGCTAAAAAGTTGCAGAAAGGTGTTCCATCATTCCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCTAAAATATACCATGCCTTTGAGCTTGGTGGACTTGCAATCTGCTATGGCAGCCGCAACAACGGCAATTGCGGTGTCAACAACGACGATGACGGAGAAGCAATGGCAGGGTCAGTGGCAGCGGGACTACATAATTATGAAGGAGACTGTTGGTTCAAGGTTAATATTTTGTTGTAA 2331 0.405 MWKKKNQVGETSEDRGDHKKAEDESPRSYDSDTLVLISMAQVLKDEGNKLFQKRNVEGALVKYEKALKLLPRNHVDISYLRSNMAACYMQMGLREYPKAINECNLALEVTPKYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALEDRGLVVNDTEIELPPDYAGPPILPLKKVKEKIHKKKKNKEKVKSLDKIEEKQAEENLEENTAEDSSVVKKAEDSRKEKKANKSKKKKAKGKTVEKKDDVKEVIEEKSTGRSEDIPKKAAKLVFGEDIRWAELPVNCSLFQLREVICERFPRLGAVLVKYKDQEGDLVTITSDEELRWAETGSQGSIRLYIVEVNPEHDPFFEKLNTKNVEKVSIANSPVNGSVVKGKDIISLSCIEDWIIRFAQLFKNHVGLEPDRYLYFHKFGMKLYSEAVEETIMSEEAQGVFDVAGGKFQEMAALALFNWGNVHMSRARQRVYFTGDSSKEHLHEQIRSLYEWAHEEYEKSGEKYETAIEIKPDFYEGFLALGQQLFEQAKLSWNYALCSKVDLSTWPSSEVLQLYNSAEDSVEKGMLIWEESGEQQLQEISNPKDILLHLQDMGLDQLFKNMSADEIATQVDNTRSQMNLLWGTILYERSIVEFKLGLLEWNESLEVAVEKFQLAGASATDIAVMLKNHCSNYGLGFKIDEIVRPWNEMYNAKKLQKGVPSFRLEPLFRRRISKIYHAFELGGLAICYGSRNNGNCGVNNDDDGEAMAGSVAAGLHNYEGDCWFKVNILL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02528 776 Pfam PB1 domain 282 353 IPR000270 GO:0005515
Phco7g02528 776 ProSiteProfiles PB1 domain profile. 278 355 IPR000270 GO:0005515
Phco7g02528 776 PANTHER PROTEIN CLMP1 3 726 IPR044517 -
Phco7g02528 776 MobiDBLite consensus disorder prediction 1 27 - -
Phco7g02528 776 Coils Coil 230 250 - -
Phco7g02528 776 CDD PB1 286 352 - -
Phco7g02528 776 Gene3D - 276 354 - -
Phco7g02528 776 SMART tpr_5 40 73 IPR019734 GO:0005515
Phco7g02528 776 SMART tpr_5 78 113 IPR019734 GO:0005515
Phco7g02528 776 SMART tpr_5 114 147 IPR019734 GO:0005515
Phco7g02528 776 SUPERFAMILY TPR-like 40 536 IPR011990 GO:0005515
Phco7g02528 776 SMART PB1_new 278 355 IPR000270 GO:0005515
Phco7g02528 776 Coils Coil 187 216 - -
Phco7g02528 776 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Phco7g02528 776 MobiDBLite consensus disorder prediction 214 259 - -
Phco7g02528 776 SUPERFAMILY CAD & PB1 domains 281 368 - -
Phco7g02528 776 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Phco7g02528 776 MobiDBLite consensus disorder prediction 224 241 - -
Phco7g02528 776 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02528 Phco-Chr7 44084796 44089084 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02528 7 44084796 44089084 Phco7g02528 7 44084796 44089084 ECH
Phco8g01197 8 12564025 12566310 Phco7g02528 7 44084796 44089084 PCT