Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0619 ATGATCTTGAAATTCCTTGAAGACAAAAATTTCGAAGAGACTGCTCATACGCTTGAGCGGGAATCTGGCCTTTTCTTTAACTTGGAATATTTTGAAGAGCTAGCACTGAATGGGGAATGGAATGAAGCTGAAAAATATATGTCTGGCTTCACCAAAATAGAGGATAACAAGTTCTCTACTAAGATCTACTTTGAAATGAGGAAACAGAAATACCTGGAGACATTGGACAAGCGTGAACATGACAAGGCTGTAGAGATTCTTAGTAATGATCTCAAAGTCTTTGCCCAATACAACAGTGAATTGTACAAGGAAATGGCCCTACTAATTACAGTAGATGATTTCAGGAAACATGCCTCTCTGACCAAGTATGGGGATACAAGGTCTGCAAGAGCTTCTATTTTCAGAGAAATTAAGAAGGGTATAGAGGCAAATCCTGTTTTCCAGGGAAAATTTAGAGTTCCTGCTGTGGCTGCTCGTGTCGGCCAGTGGAGTCTCCAAATGTCTAATCTGCAGATATGA 519 0.4008 MILKFLEDKNFEETAHTLERESGLFFNLEYFEELALNGEWNEAEKYMSGFTKIEDNKFSTKIYFEMRKQKYLETLDKREHDKAVEILSNDLKVFAQYNSELYKEMALLITVDDFRKHASLTKYGDTRSARASIFREIKKGIEANPVFQGKFRVPAVAARVGQWSLQMSNLQI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0619 172 SMART ctlh 24 82 IPR006595 -
Vvi4g0619 172 ProSiteProfiles LIS1 homology (LisH) motif profile. 1 26 IPR006594 GO:0005515
Vvi4g0619 172 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 25 82 IPR006595 -
Vvi4g0619 172 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 2 159 IPR027728 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0619 Vvi-Chr4 6237453 6238322 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0619 - - vvi:100853413 343.584