Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0623 ATGTGGATATTGGGAAGACAGAAACAGGCAGTACTAATGGCATTGAAACTCCAGAAGAAAGAACTCATCTTCTTGATCCTACAATTTCTGCATGAGAAGAAATATACAGATACCGTTCACAAGCTCGAAAGAGAGTCTGCAGTTTTCTTCAACATGCCATATTTTGAGGAGATGATGCACATGGGTCAATTTGATGAGGCACAACATTACCTTTTGGCTTTCACCAATTTGAAAGCCAATAACTACTCAAGAAAAATTTTCTTTGAAATACGGAAGCAGAAGTACCTTGAGGCATTGGATAAGCACGATGACGTGAAGGCTTTAGAAATCCTCAAGAAGGATTTGAAAGTTTTTGCATCAGATAATGAATCGTTGTTCAAAGAGATGACACAGCTTCTGGCATTAAATGATTTCAGGGAAATGGCACCACTATCAACTTACAAGGATGCAGAAACTGCCCGGAAATTGTTGACAGTGGAGCTCAAGAAGCTTCTCAGGGCAAATCCTCTAATCCGAGAGAAACTCTCTTTCCCTGACTTTGAACCTTCAAGGTTACTGGAACTCCTGAAGAAAAGGCAACCTGATAACACTAATCTGCAATCACAAGCACCTGTGATTGACAAGCCGATGCAATCTGCAAAAGAATCCGAAGACGTCATTTTTATGGGGGCAAACACGCCTCTTGAAGTCGAGCAAATGCCAGTTCAAACTCCCATAAAGGGAGCACAGCCTCTTGATTGTGCAATGATGGCATCTGAAACTCCCTTCTCCAAGGTGATGTCCGGCCAACAAAATTTAACTCATCCAGCAGGTACTGGAGCAGCTATGAATCCAAGTTCTTCAAACCCAGCTGCAAGTTCCAGTTGTCCTGGGAATTCCAATTACTTGTTGAGGACAAGGCCTGACAAGGCATTTTCTGATCCGGGTCTGAGTGGCTCGAAGTCATCACTCAATGTAACCAATGACCTGCCCAAGATCGTTGTGCAGATGTTGGATCTGGGATCACGACCGACCAGCATCGACTTCCACCCTTCTAAACACACCCTTCTTATAGTTGGAACGAGTGCAGGGGAAATAGAGATGTGGGATGTTTGTTCCCAAGAAAAGATTTTTTCAACAATTTTTAAAATTTGGAACAAGGAAGGAGGCTCCCAAAAAAAGTCGCTTTCAAGAATTTTTAGCTTTCGGAACCAGGAAGAAGGCCAATGTTCAAAAAGCGAAGGTGAAGTTAGACCTGGACATCCATCAGTTAATCGTGTACTTTGGAGCCCAGATGGCAGTTTATTTGGAGTTGCATATTCTGAAGACATTGTGCAATTATTTTGTTATTGCAGTAGAAATAGCATTTGGGAGTATATGGAGCTTGAGGCTCATGATGGTAGTGTAAATGATCTTGCCTTTGCATGCCCCAATGACCAACATTTTATTATTACCTGTGGAGACGATGCCACAATTAAGGTGTTTCATTTGGTTACTGGGGCCATACTATACATTTTCCAGGGTCATAAATCTCCTATTTGTTGTGTGGTCTCCAGTGCTAACAATGATCTTCAACATATCTGGTCAACATCGGTGGATGGTAAAATAAAAGAATGGACCTATGACAAGGACCATTCTATTGCTGAATATGATGCTCCAGGTTGCTGCTGCACAACAATGTCTTTTGGTGCTGATGGTGAAAGGCTAATTTCATGCGGAACCACTAAAGATGGAGTGTCTCACCTTGTTGAATGGCATGAAATGGGAAGCATCATGAAGAGAACCATCCAAGGTGTGAATAAATGTTCGTTTGGTGTTATGCAATTTGACACGGCAAAAAACGGCTTATTGGTGGCTGGCGATGACTTCTCATTAAAATTTTGGGATTTGAATGCTGTCGATCTTGTAACACCTATTGATGCCAGTGAAATGCTACCTGCAAGTCGATTGATCCGCTTCAACAAGGAGGGAACATTATTGGCTGTAACTGCAAATGATAATAAGATCAAAATCTTGGTGTCTGTGAATGGTTTTCAGTTGCTCCAAACAAATGAGAGAGTTCCCTGTGTACCTGCTACTGTTCCAAAGGGTGAAGACAAAGGAGCCTTAGGAGCTAAAGAACAAAGATCACCTGAAAAAGGCCATGATGGACCAATAGTTGGGAGGTTCACTGCACTGAATGAACCTGATCAGTTTCGGTGGTTGAGGCTCCCTCCTCATTCCATCATAACAAGCAAGATCTTGAGGTTGACCTACCATCATTCAGGCACCAGCATTTTGGCATTAGCAGCAGATGCCATCCATCTGCGTTGGAAATGGCCAAGCAAGGCAACGACCAGTGTTCATCCTCGACTCCTTCGAAATAAATTTGGCGAGATGATGACAAATGATGTAACTGATTCGATGCTTGATGAGGCTCCAGGCTGTTTTGCTCTGACTGCAAGTGATGGATACTTATTGTCATCTTCTGGTGGCGAAATCTCCTTGTTCAACATAAGGAGTTTTGAGAAGATGGTAACTTTCATGAATCCACCACCTGTTGCAACATATATTGCAGTCCATCCTTGGGATAACAATGTAATAGCAGTTGGCCTGGATGATTCCACAATCCAGATATATAATGTCCGAACAAGCGAGATGATAAAAAAGCTTAGACGCCATTCTAAAAGAATCACAGGCCTTGCCTTCTCCTATGTATTGGATGTACTTGTTTCTTCGGGAGCCGATGCTCAGCTAGTTGTGTGGAACTCGTTATCGGGTGGATGGGAAAGGCAGAGAAGCAGATACTTGTGGATTCCAAATGAGGAGATGAGACAGGCAAACTTGATGGACACCCGAGTCCAGTTTTCCCAGGAGCAAACCAGCTTCCTTGTCGTGTGCCAACCAAAGCTCGCTATATATGAGGCGATGACACTATATTGTGTTAGAGAGTGGAATGTTGATGGAGCTTCGTCCCCAATCTCTGATGCGACATTCTCATGCGATGGCCGGTTAGTATATGCCAGCTTTCTGGATGGGGCTGTTTGCATATTCATGGCTCAAGATCTTCAAATTCGGTGTCGGATTAGTCCTAGTGCTTATCTCCCTCCTGGTGACAGGTCTAGAATATACCCGCTTGCGGTTGCTGCACATCCACAGAAGCCGAACCAGTTTGCGCTAGGTCTGAGTGTTGGTGGGGTCATGGTCTTTGAGCCATTGGAGCCTGAAGAGCAATGGGGCTTGCCTAGACACCATTGA 3216 0.4363 MWILGRQKQAVLMALKLQKKELIFLILQFLHEKKYTDTVHKLERESAVFFNMPYFEEMMHMGQFDEAQHYLLAFTNLKANNYSRKIFFEIRKQKYLEALDKHDDVKALEILKKDLKVFASDNESLFKEMTQLLALNDFREMAPLSTYKDAETARKLLTVELKKLLRANPLIREKLSFPDFEPSRLLELLKKRQPDNTNLQSQAPVIDKPMQSAKESEDVIFMGANTPLEVEQMPVQTPIKGAQPLDCAMMASETPFSKVMSGQQNLTHPAGTGAAMNPSSSNPAASSSCPGNSNYLLRTRPDKAFSDPGLSGSKSSLNVTNDLPKIVVQMLDLGSRPTSIDFHPSKHTLLIVGTSAGEIEMWDVCSQEKIFSTIFKIWNKEGGSQKKSLSRIFSFRNQEEGQCSKSEGEVRPGHPSVNRVLWSPDGSLFGVAYSEDIVQLFCYCSRNSIWEYMELEAHDGSVNDLAFACPNDQHFIITCGDDATIKVFHLVTGAILYIFQGHKSPICCVVSSANNDLQHIWSTSVDGKIKEWTYDKDHSIAEYDAPGCCCTTMSFGADGERLISCGTTKDGVSHLVEWHEMGSIMKRTIQGVNKCSFGVMQFDTAKNGLLVAGDDFSLKFWDLNAVDLVTPIDASEMLPASRLIRFNKEGTLLAVTANDNKIKILVSVNGFQLLQTNERVPCVPATVPKGEDKGALGAKEQRSPEKGHDGPIVGRFTALNEPDQFRWLRLPPHSIITSKILRLTYHHSGTSILALAADAIHLRWKWPSKATTSVHPRLLRNKFGEMMTNDVTDSMLDEAPGCFALTASDGYLLSSSGGEISLFNIRSFEKMVTFMNPPPVATYIAVHPWDNNVIAVGLDDSTIQIYNVRTSEMIKKLRRHSKRITGLAFSYVLDVLVSSGADAQLVVWNSLSGGWERQRSRYLWIPNEEMRQANLMDTRVQFSQEQTSFLVVCQPKLAIYEAMTLYCVREWNVDGASSPISDATFSCDGRLVYASFLDGAVCIFMAQDLQIRCRISPSAYLPPGDRSRIYPLAVAAHPQKPNQFALGLSVGGVMVFEPLEPEEQWGLPRHH* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0623 1071 SMART Lish 18 50 IPR006594 GO:0005515
Vvi4g0623 1071 Gene3D - 548 679 IPR015943 GO:0005515
Vvi4g0623 1071 MobiDBLite consensus disorder prediction 693 709 - -
Vvi4g0623 1071 SMART WD40_4 536 579 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 827 867 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 582 622 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 492 533 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 324 363 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 964 1005 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 448 489 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 404 442 IPR001680 GO:0005515
Vvi4g0623 1071 SMART WD40_4 870 909 IPR001680 GO:0005515
Vvi4g0623 1071 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 877 909 - -
Vvi4g0623 1071 MobiDBLite consensus disorder prediction 260 293 - -
Vvi4g0623 1071 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 106 IPR006595 -
Vvi4g0623 1071 ProSiteProfiles LIS1 homology (LisH) motif profile. 18 50 IPR006594 GO:0005515
Vvi4g0623 1071 Pfam WD domain, G-beta repeat 495 532 IPR001680 GO:0005515
Vvi4g0623 1071 Pfam WD domain, G-beta repeat 454 488 IPR001680 GO:0005515
Vvi4g0623 1071 ProSiteProfiles Trp-Asp (WD) repeats profile. 877 909 IPR001680 GO:0005515
Vvi4g0623 1071 Gene3D - 781 1040 IPR015943 GO:0005515
Vvi4g0623 1071 Gene3D - 309 546 IPR015943 GO:0005515
Vvi4g0623 1071 Coils Coil 147 167 - -
Vvi4g0623 1071 SUPERFAMILY WD40 repeat-like 416 909 IPR036322 GO:0005515
Vvi4g0623 1071 SUPERFAMILY WD40 repeat-like 311 467 IPR036322 GO:0005515
Vvi4g0623 1071 MobiDBLite consensus disorder prediction 685 712 - -
Vvi4g0623 1071 SUPERFAMILY WD40 repeat-like 940 1058 IPR036322 GO:0005515
Vvi4g0623 1071 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 19 1067 IPR027728 GO:0006355
Vvi4g0623 1071 SMART ctlh 48 106 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0623 Vvi-Chr4 6276806 6283019 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0623 - - vvi:100262752 2152.48