Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0614 ATGGAGAGGCATTTTGGGATTTGGGCCTTCTTAGTTTTGTTTCTGGTACTGGATTATGGGTGTTTTGGATGCTTAGATGAAGAGAGGATTGCTCTCTTAGTGCTGAAAGCTGCCTTCTGTTCTCCAGATTGTTCTTCTCTTCCATCTTGGGAAGATGAAGAAAGTGACTGCTGTGGATGGGAAAGGGTTGAGTGTAGCAACACAACAGGACGAGTACTCAAGCTTTTTCTCAACAATACGAGGGAGTCATCCCAGGAATATTTGTACATCAATGCCTCTTTGTTTAGTCCATTTGTGGAGCTAAAAATACTCAATTTATCTACTAATATGCTGGCCACTTTGGGTGATGATGAGGGCTCTGAAAGACCATTTAAGTTGAACAATCTGGAGCTCCTTGATTTAAGCAGTAATACTTTGGACATCAGCATGCTCGCATCTTTGACTGAACTCTCATCACTTAAGTCTCTATCTCTAGGTACCAACATATTGGAAGGATCAATTCAAGAGCTCAATAATTTGAGAAACTTGGAGGTTCTTGATTTGTCTTCTACCAATATCAGCAGCAGCATTCTGCAAATAGTAGAAGTAATGACATCACTTAAAGCCTTATCTTTGCGAAGCAATGGAATCAATGGTTCACAGACCGCGCTTCAAGGTTTGTGCAAACTTAGGAACCTTCAAGAGTTAGACCTCAGTGATAATGGGTTTGAGGGCAGTGTCTCTCCATGTTTGGGAAACTTGACCTCCCTTCGAGCATTGGATCTATCTAAAAATCGATTTTCAGGAAACCTAGATTCATCTCTCTTTGCTGGTCTCATGAAACTAGAATTCCTTTCCCTTTCACATAATGTCTTCCAAACTTTTCCTCCCATTAGCTCCTTTGCTAAGCATTCCAAGCTTGAGGTGCTTGATCTCATCTGTGGGAATAACACATTGTTGTTAGAAAGTGAAGATCAAACTTGGGTTCCATCCTTTCAACTGAAGGTGTTTCGTCTTTCAAGTTGCATACTCAAAACAGGGTCCATTCCAAGTTTTCTTCACCACCAGCATGATTTAAGAGTAGTTGATCTCTCGAATAGCAGTTTGGAAGAAGATTTTCCCACTTGGCTGATGAAGAACAATACAAGATTGGAAGAACTAAACTTGAAGAATAACTCTCTTACAGGCTATTTTCACCTTCCTTATCGTCCACATATATTTACCTCTGCAATAGATATTTCCAACAATCTCTTGCAAGGCCAAATGCCATCAAACATCAGTGTCTCTCTCCCAAATCTCATGTTCCTGAATGTGTCGAGGAATTCCTTTGAAGGTAGCATTCCTTCCTTCGGTGGTATGAGAAAATTGCTCTTTTTGGACTTGTCTAACAACTTATTCACGGGAGGAATACCCGAGGACTTGGCCATGGGTTGCCCCTCTCTGGAGTACCTTATACTCTCAAAGAATGATTTGCATGGCCAAATGTTTCCAAGGGTTTCTAATCTCCCCAGTTTGAGACATTTGGAGTTGGATGACAATCACTTCTCTGGAAAAATCCCAGACCTGTCCAACAGTTCTGGATTGGAGAGATTAGATGTTAGTCACAACTCCATATCCGGTAAGCTGCCGGGGTGGATTGGAAATATGTCAAATTTGGCTGCACTAGTCATGCCCAACAATAGTCTTGAAGGACCCATTCCTGTTGAATTTTGCTCCCTTGATGCCCTTGAACTCCTAGACCTTTCAAACAACAGTCTCTCCGGCTCCCTTCCATCCTGCTTTAGTCCATCCTCATTAATTCATGTACACTTGCAGGAAAATCATCTCACAGGACCTCTGACTAAGGCTTTCACTAGAAGCATGCATTTGGCAACTTTAGACATTAGAAATAACAATTTATCTGGTGGCATCCCAGATTGGATTTCCATGTTCTCAGGCTTAAGCATTCTCCTCTTGAAAGGAAACCATTTTCAGGGAAAAATTCCCTATCAGTTATGCCAATTGTCCAAGATAACCATATTGGATCTTTCTTACAACAGTCTCTCTGGTCATATTCCTTCTTGCTTAAACAAAATCCGATTCAGGACTGGATTTCGATCTGGGAAATTTTCCATCATATCATATTTCCAAAGCTCAGGATTCTCATCATATCTGTATCATAGCCAGCACATTGAATTATCTCAAGTAAATGTCAACAGCTACCCCATAGCTTATGATAAGGCCATGGCCGAGTTCACGACGAAGAACAGGACCGACTTCTACAAGGGAAACTTTCTATACTCCATGACTGGGATCGATCTCTCTTCCAACAAGTTGACAGGTGCAATACCTCCTGAAATTGGAAACTTGAGCCAGGTTCACGCATTGAATCTTTCTCACAACATTTTAACTGGGCCAATCCCAGCAGCCTTCTCAGGTCTGAAGAGCATAGAGAGCTTGGACCTCTCCTACAACAACCTGACTGGTACCATCCCTGGGGAACTCACTGAGCTAACCAACTTGGCAGTTTTCAGTGTGGCTTACAACAACTTAAGTGGTAAAATACCAGAAATGACAGCCCAGGAGATTGATAAGGAGGAATTCAAGAAAGTTATGGCTTTGATGCGAGCTCATAACAGACAAGGATCTCTCCACAGGGATGGACTTCGATTTGGATTCAGAACTGTTGGTTCTGTGGAAAATGGAGGCCTGCTGGAGCACTTCTTTGGTAAAGATGGAAAGGCAAAACTCCAACATGAGAAATTTTTCCAGTTTATGAGAGATCTGCATGATGAACTGCTGATATTGGAGTTTGCCCATTATGATTACAAATTACGAGGATCCATTTCAGCTAAGGATTTTGCCTTATCCATGGTAGCTTCTGCCGACTTGAGTCATTTAAACAGGTTGCTTGATCGGGTTGATGGATTAAACAAGCAGTCTTCTCTAAGTGACATTCGTATTACCTTTGAGGAATTTAAGAGTTTTGCAGAGCTACGTAGAAGATTGAGACCATTTGCATTGGCTCTTTCTAGTTATGGGAAAGTAAATGGACTATTGACAAAGACGGATTTCCAACGTGCAGCATCCAATGTATGTGGCATTTCTCTCAGCAAGTGTGTGGTTGAAATCATCTTCCATGTGTTTGACATGAACGATGATGGAAAATTAAGCTCAGAGGAGCTTGTGAGAGTTTTACAGAAACGGGAAAGGGACATTGCTCAACCGATGGAGTCAGGAATCATGGGATTTTTTTCCTGCTGTTGTAATCATTCAAATTACGGCTCTATTTCAGGACTTCTTTCTTGA 3267 0.4157 MERHFGIWAFLVLFLVLDYGCFGCLDEERIALLVLKAAFCSPDCSSLPSWEDEESDCCGWERVECSNTTGRVLKLFLNNTRESSQEYLYINASLFSPFVELKILNLSTNMLATLGDDEGSERPFKLNNLELLDLSSNTLDISMLASLTELSSLKSLSLGTNILEGSIQELNNLRNLEVLDLSSTNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLRNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHHQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPHIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPSFGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPDLSNSSGLERLDVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNSLSGSLPSCFSPSSLIHVHLQENHLTGPLTKAFTRSMHLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIRFRTGFRSGKFSIISYFQSSGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQEIDKEEFKKVMALMRAHNRQGSLHRDGLRFGFRTVGSVENGGLLEHFFGKDGKAKLQHEKFFQFMRDLHDELLILEFAHYDYKLRGSISAKDFALSMVASADLSHLNRLLDRVDGLNKQSSLSDIRITFEEFKSFAELRRRLRPFALALSSYGKVNGLLTKTDFQRAASNVCGISLSKCVVEIIFHVFDMNDDGKLSSEELVRVLQKRERDIAQPMESGIMGFFSCCCNHSNYGSISGLLS* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0614 1088 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 471 689 - -
Vvi4g0614 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 749 867 - -
Vvi4g0614 1088 SUPERFAMILY L domain-like 40 392 - -
Vvi4g0614 1088 CDD EFh_MICU 848 1055 - -
Vvi4g0614 1088 Gene3D Ribonuclease Inhibitor 122 468 IPR032675 -
Vvi4g0614 1088 Gene3D Ribonuclease Inhibitor 21 121 IPR032675 -
Vvi4g0614 1088 Gene3D - 896 1065 - -
Vvi4g0614 1088 SUPERFAMILY L domain-like 443 683 - -
Vvi4g0614 1088 PANTHER UNNAMED PRODUCT 490 875 - -
Vvi4g0614 1088 Pfam EF-hand domain pair 1004 1055 IPR002048 GO:0005509
Vvi4g0614 1088 SMART LRR_sd22_2 518 547 - -
Vvi4g0614 1088 SMART LRR_sd22_2 126 146 - -
Vvi4g0614 1088 SMART LRR_sd22_2 800 829 - -
Vvi4g0614 1088 SMART LRR_sd22_2 197 222 - -
Vvi4g0614 1088 SMART LRR_sd22_2 661 684 - -
Vvi4g0614 1088 SMART LRR_sd22_2 150 172 - -
Vvi4g0614 1088 SMART LRR_sd22_2 272 293 - -
Vvi4g0614 1088 SMART LRR_sd22_2 223 249 - -
Vvi4g0614 1088 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vvi4g0614 1088 SUPERFAMILY EF-hand 890 1054 IPR011992 -
Vvi4g0614 1088 ProSitePatterns EF-hand calcium-binding domain. 1036 1048 IPR018247 -
Vvi4g0614 1088 SUPERFAMILY L domain-like 751 844 - -
Vvi4g0614 1088 Pfam Leucine rich repeat 778 837 IPR001611 GO:0005515
Vvi4g0614 1088 Pfam Leucine rich repeat 520 579 IPR001611 GO:0005515
Vvi4g0614 1088 Pfam Leucine rich repeat 424 484 IPR001611 GO:0005515
Vvi4g0614 1088 ProSiteProfiles EF-hand calcium-binding domain profile. 1028 1058 IPR002048 GO:0005509
Vvi4g0614 1088 SMART LRR_typ_2 98 121 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 446 470 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 126 151 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 566 589 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 661 685 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 272 296 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 752 776 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 495 519 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 800 824 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 423 445 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 173 196 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 223 246 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 247 271 IPR003591 -
Vvi4g0614 1088 SMART LRR_typ_2 197 219 IPR003591 -
Vvi4g0614 1088 PRINTS Leucine-rich repeat signature 569 582 - -
Vvi4g0614 1088 PRINTS Leucine-rich repeat signature 800 813 - -
Vvi4g0614 1088 ProSiteProfiles Leucine-rich repeat profile. 128 148 IPR001611 GO:0005515
Vvi4g0614 1088 ProSiteProfiles Leucine-rich repeat profile. 497 519 IPR001611 GO:0005515
Vvi4g0614 1088 Gene3D Ribonuclease Inhibitor 469 863 IPR032675 -
Vvi4g0614 1088 Pfam Leucine Rich Repeat 225 247 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0614 Vvi-Chr4 6129271 6137870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0614 4 843 Miscellaneous Gene Families AT1G74190 40.411 6.37e-170 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0614 - - vvi:100257781 1318.14