Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0615 ATGGAGAGGCATTTTGGGATTTGGGCCTTCTTAGTTTTGTTTCTGGTACTGGATTATGGGTGTTTTGGATGCTTAGATGAAGAGAGGATTGCTCTCTTAGAGCTGAAAGCTGCCTTCTGTTCTCCAGATTGTTCTTCTCTTCCATCTTGGGAAGATGAAGAAAGCGACTGCTGTGGATGGGAAAGGGTTGAGTGTAGCAACACAACAGGACGAGTACTCAAGCTTTTTCTCAACAATACGAGGGAGTCATCCCAGGAAGATTTGTACCTCAATGCCTCTTTGTTTATTCCATTTGTGGAGCTAAAAATACTCAATTTATCTACTAATATGCTGGTCACTTTGGGTGATGATGATGGCTCTGAAAGACCATTTAAGTTGAACAATCTGGAGCTCCTTGATTTAAGCAATAATACTTTGGACATTAGCATCCTCGCATCTTTGACTGAACTCTCATCACTTAAGTCTCTATCTCTAGGTACCAACATATTGGAAGGATCAATTCAAGAGTTGGCTGCTTTGCACAACTTGGAGGAGTTGGATTTGAGTAAGAATGACTTGGAAAGCTTTATAACAACCACAGGGCTCAAAAGTCTGAGAAAGTTGCGAGTTTTACACCTGGAGACAAATGATTTCAATATCAGCACCCTAAAATCATTGGGGAGGCTCTCATTGCTTAAGGAGCTTTATCTTGGAGGGAATAAATTGGAAGGTTCTGTTACACTCAGAGAGCTCAATAATTTGAGAAACCTGGAGGTTCTTGATTTGTCTTCTACCAATATCAGCAGCAGCATTCTGCAAATAGTAGAAGTAATGACATCACTTAAAGCCTTATCTTTGCGAAGCAATGGAATCAATGGTTCACAGACCGCGCTTCAAGGTTTGTGCAAACTTAAGAACCTTCAAGAGTTAGACCTCAGTGATAATGGGTTTGAGGGCAGTGTCTCTCCATGTTTGGGAAACTTGACCTCCCTTCGGGCATTGGATCTATCTAAAAATCGATTTTCAGGAAACCTAGATTCATCTCTCTTTGCTGGTCTCATGAAACTTGAATTCCTTTCCCTTTCACATAATGTCTTCCAAACTTTTCCTCCCATTAGCTCCTTTGCTAAGCATTCCAAGCTTGAGGTGCTTGATCTCATCTGTGGGAATAACACATTGTTGTTAGAAAGTGAAGATCAAACTTGGGTTCCATCCTTTCAACTCAAGGTGTTTCGTCTTTCAAGTTGCATACTCAAAACAGGGTCCATTCCAAGTTTTCTTCACTACCAGCATGATTTAAGAGTAGTTGATCTCTCGAATAGCAGTTTGGAAGAAGATTTTCCCACTTGGCTGATGAAGAACAATACAAGATTGGAAGAACTAAACTTGAAGAATAACTCTCTTACAGGCTATTTTCACCTTCCTTATCGTCCAAATATATTTACCTCTGCAATAGATATTTCCAACAATCTCTTGCAAGGCCAAATGCCATCAAACATCAGCGTCTCTCTCCCAAATCTCATGTTCCTGAATGTGTCGAGGAATTCCTTTGAAGGTAGCATTCCTTCCTTCGGTGGTATGAGAAAGTTGCTCTTTTTGGACTTGTCTAACAACTTATTCACGGGAGGAATACCCGAGGACTTGGCCATGGGTTGCCCCTCTCTGGAGTACCTTATACTCTCAAAGAATGATTTGCATGGCCAAATGTTTCCAAGAGTTTCTAATCTCCCTAGTTTGAGACATTTGGAGTTGGATGACAATCACTTCTCTGGAAAAATCCCAGACCTGTCCAACAGTTCTGGATTGGAGAGATTATATGTCAGTCACAACTCCATATCCGGTAAGCTGCCGGGGTGGATTGGAAATATGTCAAATTTGGCTGCACTAGTCATGCCCAACAATAGTCTTGAAGGACCCATTCCTGTTGAATTTTGCTCCCTTGATGCCCTTGAACTCCTAGACCTTTCAAACAACAATCTCTCCGGCTCCCTTCCATCCTGCTTTAGTCCTTCCTTATTAATTCATGTACACTTGCAGGAAAATCATCTCACAGGACCTCTGACTAAGGCTTTCACTAGAAGCATGGATTTGGCAACTTTAGACATTAGAAATAACAATTTATCTGGTGGCATCCCAGATTGGATTTCCATGTTCTCAGGCTTAAGCATTCTCCTCTTGAAAGGAAACCATTTTCAGGGAAAAATTCCCTATCAGTTATGCCAATTGTCCAAGATAACCATATTGGATCTTTCTTACAACAGTCTCTCTGGTCATATTCCTTCTTGCTTAAACAAAATCCAATTCAGGACTGGATTTCGATCTGGGAAATTTTCCATCATATCATATTTCCCAAGCCCAGGATTCTCATCATATCTGTATCATAGCCAGCACATTGAATTATCTCAAGTAAATGTCAACAGCTACCCCATAGCTTATGATAAGGCCATGGCCGAGTTCACGACGAAGAACAGGACCGACTTCTACAAGGGAAACTTTCTATACTCCATGACTGGGATCGATCTCTCTTCCAACAAGTTGACAGGTGCAATACCTCCTGAAATTGGAAACTTGAGCCAGGTTCACGCATTGAATCTTTCTCACAACATCTTGACTGGGCCAATCCCAGCAGCCTTCTCAGGCCTGAAGAGCATAGAGAGCTTGGACCTCTCCTACAACAACCTGACTGGTACCATCCCTGGGGAACTCACTGAGCTAACCAACTTGGCAGTTTTCAGTGTGGCTTACAACAACTTAAGTGGTAAAATACCAGAAATGACAGCCCAGTTTGGGACATTCTTGGAAAACAGTTATGTGGGAAATCCTTATCTTTGTGGGTCACTGTTGAGGAAAAACTGCAGCAGAGCTGAGGAAGAAGCAGAAATCGAGGAAGGAGAAAAAGGTTTGACAGATAGGGACATTTTCTATGTGAGCTTTGGGGCGTCTTATGTAGTAGTATTATTGGGAGTTGCTGCTGTTCTCTACATCAATGGGGGTTGGAGAAAGAAATGGTTTCATGTCATTGATGTACTGATCACATGTTGCTGCAATTTTGTGATGCACCTTGTTGGTAAGTTCTCCGGTTAG 3063 0.4179 MERHFGIWAFLVLFLVLDYGCFGCLDEERIALLELKAAFCSPDCSSLPSWEDEESDCCGWERVECSNTTGRVLKLFLNNTRESSQEDLYLNASLFIPFVELKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILASLTELSSLKSLSLGTNILEGSIQELAALHNLEELDLSKNDLESFITTTGLKSLRKLRVLHLETNDFNISTLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPSFGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPDLSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVMHLVGKFSG* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0615 1020 Gene3D Ribonuclease Inhibitor 25 192 IPR032675 -
Vvi4g0615 1020 SUPERFAMILY L domain-like 400 510 - -
Vvi4g0615 1020 Gene3D Ribonuclease Inhibitor 193 346 IPR032675 -
Vvi4g0615 1020 SUPERFAMILY L domain-like 477 932 - -
Vvi4g0615 1020 Pfam Leucine rich repeat 852 911 IPR001611 GO:0005515
Vvi4g0615 1020 Pfam Leucine rich repeat 594 653 IPR001611 GO:0005515
Vvi4g0615 1020 Gene3D Ribonuclease Inhibitor 543 954 IPR032675 -
Vvi4g0615 1020 Gene3D Ribonuclease Inhibitor 475 542 IPR032675 -
Vvi4g0615 1020 ProSiteProfiles Leucine-rich repeat profile. 571 593 IPR001611 GO:0005515
Vvi4g0615 1020 ProSiteProfiles Leucine-rich repeat profile. 175 196 IPR001611 GO:0005515
Vvi4g0615 1020 FunFam Tyrosine-sulfated glycopeptide receptor 1 785 950 - -
Vvi4g0615 1020 SUPERFAMILY L domain-like 39 379 - -
Vvi4g0615 1020 PRINTS Leucine-rich repeat signature 874 887 - -
Vvi4g0615 1020 PRINTS Leucine-rich repeat signature 643 656 - -
Vvi4g0615 1020 Gene3D Ribonuclease Inhibitor 347 474 IPR032675 -
Vvi4g0615 1020 ProSiteProfiles Leucine-rich repeat profile. 128 148 IPR001611 GO:0005515
Vvi4g0615 1020 PANTHER RECEPTOR-LIKE PROTEIN 14 291 995 - -
Vvi4g0615 1020 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Vvi4g0615 1020 SMART LRR_sd22_2 735 758 - -
Vvi4g0615 1020 SMART LRR_sd22_2 271 296 - -
Vvi4g0615 1020 SMART LRR_sd22_2 126 149 - -
Vvi4g0615 1020 SMART LRR_sd22_2 346 367 - -
Vvi4g0615 1020 SMART LRR_sd22_2 150 172 - -
Vvi4g0615 1020 SMART LRR_sd22_2 592 621 - -
Vvi4g0615 1020 SMART LRR_sd22_2 297 323 - -
Vvi4g0615 1020 SMART LRR_sd22_2 874 903 - -
Vvi4g0615 1020 SMART LRR_sd22_2 222 252 - -
Vvi4g0615 1020 SMART LRR_sd22_2 173 194 - -
Vvi4g0615 1020 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vvi4g0615 1020 SMART LRR_typ_2 173 196 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 198 221 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 640 663 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 321 345 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 98 121 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 569 593 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 826 850 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 874 898 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 497 519 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 520 544 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 247 270 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 271 293 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 297 320 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 735 759 IPR003591 -
Vvi4g0615 1020 SMART LRR_typ_2 346 370 IPR003591 -
Vvi4g0615 1020 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 588 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0615 Vvi-Chr4 6145587 6149666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0615 4 821 Miscellaneous Gene Families AT1G74190 31.337 4.29e-68 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0615 - - vvi:100257781 1967.2