Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0881 ATGGGTAAGAAAAAGAAACAGGTAGGAGAAACATGGGGCGAAAATAGTAGAAATCAAAGCAAAATTGGAGATAGTAGCTCCAAAGCTTATGATAAGGATACTATGGTATTTATATCCATGTCTAAAGAGTTGAAGGGTGAGGGGAACAAGCTGTTCCAAAAGAGTGACCTCGAAGGAGCTATGCTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGAAATCATATAGATGTGTCCCATCTACGGAGTAACATAGCTGCATGCTACATGCAGATGGGACTCAGTGAGTACCCTAGGGCGGTTCATGAATGCAATTTGGCTCTTGAAGTTACACCCAAATACAGTAAAGCACTTTTGAAGAGGGCAGGATGCTATGAAGCTTTAAATAGGCTGGATTTAGCTATGAGAGATGTTAGTACCGTTTTGAAGATCGAGCCAAATAATATCATGGCATTGGAAATTTCAGAAAGGGTGAAAAATGCTCTTGAGGAGAAAGGATTAAAAGTTACTGACACAGTAATTGAGTTGCCTCCAGATTCTGTTGAACCTCCTTACGCTTTGCCTCCAGAAGAAGTAGTAAAAGAGAAGACATGCAAGAAGAAGAACAAAAAATTTGAGCTGATGGCTGCTGATAACACAATTGTAGAAAAGCAGGCTGGGGAGAAATTGGAAGAGAAGAAGGCTGAGGACAGCATTGAAGAGCGGAAGGCTGTTAACAAATCCAAGAAGGTGACCAAGGAAAAAATTAACGAGAACAAGGCTGATGTTAAGGAGGTTGTGGAGGAAAAAATCAATGGTAGAAAGGAAGATGTACCCAAGAAAACAGCAAAACTTGTTTTTGGTGAGGATATTAGATGGGCAGAATTGCCAGTTAATTGCAGCCTCCTGCAGCTAAGGGAAGTTATCAGTGAACGATTCCCAAGCCTAGGAGCAGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGAGGAATTAAGATGGGCTGAAACATCAGCAGAATCACAGAGCTCTATCCGATTGTACATAGTGGATGCCAATCCTGCGCAGAATCAATTCCATGAGACAATTAATGAAAAGAAGGGGCAAAGGCCTGGGACTGATAATGCACCTGAGAATGGTTGCGTGGTAAAAGAAAAGGAAATTATTAGTTCATCTTGCATTGAGGATTGGATAATCCGGTTTGCCCAACTATTCAAGAACTATGTTGGATTTGAATCTGACAGATATTTAGATTTTCACGAACGTGGAATGAAGCTCTATTCTGAGGCCATGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAACTGGGGAAATGTATACATGTCTAGGGCCAGAAAGAAAGTGTATTTCACAGAAGAATCTTCTAAAGAGCATCTGTATGAACAGATAAAAAATTCATATGACTGGGCACAGCACGAGTATAAAAGAGCAGGAGAAAAATATGAAGCGGCCATTGAAATTAAATCAGATTTTTACGAGGGCTTCCTGGCATTAGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTAGCAGTAATGTTGAGTTAGCAACATGGCCCTCTGCTGAGGTTCTTCAACTTTACAACAAGGCTGAGGAAAATATGGAGAAAGGAATACAGATATGGGAAGAATCACAAGAGCAGTGCTTGAGTGAAACCTCCAAATCAAAGGATGTCAAGGTACATTTGCAGAACATGGGATTGGATGGGCTATTTAAAAATATGTCATCAGAAGAAATTGCAGTACAGGCAGCAAATATGAGGTCTCAAATAAATCTCCTGTGGGGTACTATGCTATATGAACGTTCAATTGTGGAATTCAAATTAGGGCTGCCAGTATGGCATGACTGTCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAATGCTGCTATAGAAGGTCTAGGATTCAAAATCGACGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCAGAGTCAAGTTTCATCATTTCATTTGGAACCCTTATTCAGAAGGCGAATTTCCAAAATTTATCATGCCCTAGAGCTTGTATGA 2190 0.405 MGKKKKQVGETWGENSRNQSKIGDSSSKAYDKDTMVFISMSKELKGEGNKLFQKSDLEGAMLKYEKALKLLPRNHIDVSHLRSNIAACYMQMGLSEYPRAVHECNLALEVTPKYSKALLKRAGCYEALNRLDLAMRDVSTVLKIEPNNIMALEISERVKNALEEKGLKVTDTVIELPPDSVEPPYALPPEEVVKEKTCKKKNKKFELMAADNTIVEKQAGEKLEEKKAEDSIEERKAVNKSKKVTKEKINENKADVKEVVEEKINGRKEDVPKKTAKLVFGEDIRWAELPVNCSLLQLREVISERFPSLGAVLVKYRDQEGDLVTITSDEELRWAETSAESQSSIRLYIVDANPAQNQFHETINEKKGQRPGTDNAPENGCVVKEKEIISSSCIEDWIIRFAQLFKNYVGFESDRYLDFHERGMKLYSEAMEETVTSEEAQGLFDMAGDKFQEMAALALFNWGNVYMSRARKKVYFTEESSKEHLYEQIKNSYDWAQHEYKRAGEKYEAAIEIKSDFYEGFLALGQQQFEQAKLSWYYAISSNVELATWPSAEVLQLYNKAEENMEKGIQIWEESQEQCLSETSKSKDVKVHLQNMGLDGLFKNMSSEEIAVQAANMRSQINLLWGTMLYERSIVEFKLGLPVWHDCLEVAVEKFELAGASPTDIAVMLKNHCSNNAAIEGLGFKIDEIVQAWNEMYEAKKWQSQVSSFHLEPLFRRRISKIYHALELV 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0881 729 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Glsi13g0881 729 CDD PB1 281 349 - -
Glsi13g0881 729 SMART PB1_new 273 352 IPR000270 GO:0005515
Glsi13g0881 729 SUPERFAMILY TPR-like 41 158 IPR011990 GO:0005515
Glsi13g0881 729 ProSiteProfiles PB1 domain profile. 273 352 IPR000270 GO:0005515
Glsi13g0881 729 SUPERFAMILY CAD & PB1 domains 275 358 - -
Glsi13g0881 729 MobiDBLite consensus disorder prediction 1 27 - -
Glsi13g0881 729 Gene3D - 263 351 - -
Glsi13g0881 729 SMART tpr_5 41 74 IPR019734 GO:0005515
Glsi13g0881 729 SMART tpr_5 115 148 IPR019734 GO:0005515
Glsi13g0881 729 SMART tpr_5 79 114 IPR019734 GO:0005515
Glsi13g0881 729 Pfam PB1 domain 275 351 IPR000270 GO:0005515
Glsi13g0881 729 Gene3D Tetratricopeptide repeat domain 39 169 IPR011990 GO:0005515
Glsi13g0881 729 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Glsi13g0881 729 PANTHER PROTEIN CLMP1 3 727 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0881 Glsi-ChrGlsi13 27191869 27194142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0881 24 148 Calmodulin-binding Proteins AT3G25230 29.851 4.49e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0881 13 27191869 27194142 Glsi13g0881 13 27191869 27194142 ECH