Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0618 ATGTCTCTCAGTAAAGAGCTGGTCTTCTTGATCTTACAGTTCCTTGATGAGGAAAACCTAAAAGAAACTGCTCACATTTTGGAGCGGGAAACAGGTTATTTCTTTGACATGAAGTACTTTGAGGGCCTGGCACTTAGTGGGAACTGGGATGAGGTTGAAAGATATCTCTCTGGTTTCACAAAAGTGGAGGACAACAAGTTTTCACTCAAGATCTATTTTGAAATCAGAAAGCAGAAGTTCCTTGAGGCATTGGATAACCATGATGGCTCCAAGGCTTTAGGTATCCTTGTGAATGATCTGAAAGTTTTTGCCTCATACAATGAAGATCTGTACAAGGAGATGACTCAGCTTCTGACTACAGATGATTTCAGGAAACACGAATCTCTCTCCACATATAGGGACACAAATTCTGCAAGAATAATCATGATGAAGGATCTGAAGAAAGTTATTGAGGCAAATCCCCTCTTTCGTGGTAAACTAAAGTTTCCTAATTTCAGAAGTCAAAGGTTGCGACGTCTCATTAACCAAAGCTTGAATTGGCAGCATGTACATTGTTCCTATCCTCAACCAGACCCCGTCATAAAAACTCTTTTTTTGGATCATGTTTGTCAACCACTAGACAATCATTCAATTGTAAACAATCCTCCGCCTTCGGAAGTTGCATCAGCACCAGTTCCAACTTCCCCCTCCAGTTGTACTTTTACTCCATCTACTGTGACTCATTCTGCAGTTTCTGCTGGAACTGTTGGTCTCTGTGCACCAAGAAACCCAGCTGAAACTTTGGAGGAACTCAAGGATTCAGAAAGTTTGTCTAAAAGTGGGACACTTGAGACTTTGGATGAGGTAACATCAGGATTCACTTATCCAGGCCAAGGTCAAAGTTCAGTATTCAGATTACCTGATGACTTTCCAAAGTTAGTTCAGAAGACATTGAATGAAGGATCATCTCCAGTGAGCATGGATTTTCATCCTGTTCAATCAACCCTTCTTATAGTTGGAACCATCGTTGGGGACATAGGTTTGTGGGAAGTTCTTTCTGGAGAGAAGTTACTATCCAGAAGTTTTAAGGTTTGGGATATTGGAGCTTGTTCACCGATTTTCAAGGCAGCTATGGTTAAAGACCCATGTGTATCAGTTAAGTGTATACGATGGAGCCCTGATGGTTCAATATTTGGGGTTGCATATTCAAAACATATTTTACAATTATACTCCTATGGTGGTGCCAGTGACGTTCAGCCAAAATTGGAGTTTGACGCTCATGTTGGTGGTGTAAATGACCTCGCCTTCTGTGCCCCTGATAAGAAACTTATGGTCATAAGCTGTGGTGATGACAAGATTGTTAAGGTGTGGGATGCAGTTAACGGTGTCAAAATGTTCACTTTTGAGGGTCATGAGGCCTCTGTATATTCTGTCTTACCTCACACCAAGGAGAGAATTCATTTTATCTTTTCTACATCAGTGGATGGCAAGATAAAAGCATGGTTGTATGACAATTTGGGAGCGAGAGTTGATTTTGATGCTCCAGGTCATTGGTGCACAACAATGGCATACAGTGATGATAATAAAAGGATTTTTTCATGTGGCACTAGTAAAGATGGAGAGTCATTCCTTGTTGAATGGAATGAGACTGAAGGTTCTTTGAAGAGAATTTACCAGGGACTTCGGAAGCCTTCAATTGGGATCCTGCAATTTGATACTGCTAAGAACCAGTTTTTGGCTGTTGGCGATGACCATTTAATCAAACTTTGGGATATGGACAACCTTGAACTCTTGACAACTATTGATGCAGATGGAGACCTACCAGCAAGTCCATGTGTTCGCTTCAACAAGGAGGGAACGTTATTAGCTGTTTTTGCAAAGGGAAACAGAATCAAAATCTTGGCAAATGATTCCAGTCCTAAGTTGCAGCAAACTTCTGAAAATAATTACCTTGCTTCCTCTAGTCTCTCTGAAATACTGAGTGAGCTTTCAATCAGCCAAATTTCATCTGTTGGTAGCGCTGGCATGGAAGATGGTGGTCTTCCTGTGAATGAAGGAACAAGGAGCTTGGAGAATGTGAAACCCATTTTAACTGAGGAAGTCAATGGGAATATCTCTAACATCTATTATCCTCCTCAGTTCCAGTTCTTGAGTCTTCCTGCTAAGACAAACAAGGTGTCAAGTTTGATCTACAACAATGCAGGTGATTCCATTTTGGCATTAGGATCAAATGTTCATGTGGTTTGGAAATGGCCGCAAAATGACCTTAATATGAGTGGAAAGGCAACCACCAAGATTCCCCCTCAATTATGGAAACCAAAAGGCAGGTCACAACTGATTGGTGATTACAGTGCTGGAACCAACCCTGCAGACGTTGTAGCATGTTTTGTTTTTTCCAAAAATGATTCATATGGCATATCAGCTTCAGGAGGGAAGATTTCTGTGTTCAACATGCTGACATATAAGAAAATGACAACTTTTATGTCTTCTCCACCAATGGCAACATTTCTTGCTCTTCATCCTCAAGATAACAATATAATTGCAGTAGGCCTGGATGATTCCACAATTGTGATTTACAATGTTCGCAATGATGAGGTTGAGAACAAGCTTAAGGGCCACTTTGGAAAGATCACTGGCCTTGCCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAGGAGCAGATGCTCAGATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATGCAGATCCCTGATGAGGGTCCACCACTGTCAGACATCCGAATCCAGTTTCACCAGGATCAAATTCACTTCCTTGCTGTGCATGACACTTGTCTTGCAATATATGAAGCAAAGAAACTAGAATGCATTGGACAGTGGGTCACAGGAAAATTTTCGGCAGAAATCTCGCATGCAACATTTTCTTCTGATAGCCAGTTAGTATATGCAATCTTTCTAGATGGAACGGCTTCTGTATTTAACACTCCAAATTTCCACCTGCAATGTCGGATTGATTTCAATGCTTGTATTCCTCTCGATATCAGATGTGATGTATACCCACTTGTGGTTGCCGCTCATCCAAATAACCCAAACCAGTTTGCGGTTGGCTTATCTAATGGTGGCATCCATATCATTGAGCCCCTTGAATCTGTAGGGAAATGGACAGCATTGCCACCAGTTGTTGACCCGCTTGCCTGA 3174 0.4149 MSLSKELVFLILQFLDEENLKETAHILERETGYFFDMKYFEGLALSGNWDEVERYLSGFTKVEDNKFSLKIYFEIRKQKFLEALDNHDGSKALGILVNDLKVFASYNEDLYKEMTQLLTTDDFRKHESLSTYRDTNSARIIMMKDLKKVIEANPLFRGKLKFPNFRSQRLRRLINQSLNWQHVHCSYPQPDPVIKTLFLDHVCQPLDNHSIVNNPPPSEVASAPVPTSPSSCTFTPSTVTHSAVSAGTVGLCAPRNPAETLEELKDSESLSKSGTLETLDEVTSGFTYPGQGQSSVFRLPDDFPKLVQKTLNEGSSPVSMDFHPVQSTLLIVGTIVGDIGLWEVLSGEKLLSRSFKVWDIGACSPIFKAAMVKDPCVSVKCIRWSPDGSIFGVAYSKHILQLYSYGGASDVQPKLEFDAHVGGVNDLAFCAPDKKLMVISCGDDKIVKVWDAVNGVKMFTFEGHEASVYSVLPHTKERIHFIFSTSVDGKIKAWLYDNLGARVDFDAPGHWCTTMAYSDDNKRIFSCGTSKDGESFLVEWNETEGSLKRIYQGLRKPSIGILQFDTAKNQFLAVGDDHLIKLWDMDNLELLTTIDADGDLPASPCVRFNKEGTLLAVFAKGNRIKILANDSSPKLQQTSENNYLASSSLSEILSELSISQISSVGSAGMEDGGLPVNEGTRSLENVKPILTEEVNGNISNIYYPPQFQFLSLPAKTNKVSSLIYNNAGDSILALGSNVHVVWKWPQNDLNMSGKATTKIPPQLWKPKGRSQLIGDYSAGTNPADVVACFVFSKNDSYGISASGGKISVFNMLTYKKMTTFMSSPPMATFLALHPQDNNIIAVGLDDSTIVIYNVRNDEVENKLKGHFGKITGLAFSEVLNVLVSSGADAQIVVWNYDGWERVNSRSMQIPDEGPPLSDIRIQFHQDQIHFLAVHDTCLAIYEAKKLECIGQWVTGKFSAEISHATFSSDSQLVYAIFLDGTASVFNTPNFHLQCRIDFNACIPLDIRCDVYPLVVAAHPNNPNQFAVGLSNGGIHIIEPLESVGKWTALPPVVDPLA* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0618 1057 ProSiteProfiles Trp-Asp (WD) repeats profile. 863 904 IPR001680 GO:0005515
Vvi4g0618 1057 Pfam WD domain, G-beta repeat 413 451 IPR001680 GO:0005515
Vvi4g0618 1057 Pfam WD domain, G-beta repeat 862 895 IPR001680 GO:0005515
Vvi4g0618 1057 ProSiteProfiles LIS1 homology (LisH) motif profile. 3 35 IPR006594 GO:0005515
Vvi4g0618 1057 SUPERFAMILY WD40 repeat-like 692 1036 IPR036322 GO:0005515
Vvi4g0618 1057 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 377 905 IPR011047 -
Vvi4g0618 1057 Gene3D - 504 647 IPR015943 GO:0005515
Vvi4g0618 1057 Gene3D - 287 503 IPR015943 GO:0005515
Vvi4g0618 1057 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 33 91 IPR006595 -
Vvi4g0618 1057 SMART WD40_4 856 895 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 945 986 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 454 495 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 544 584 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 769 810 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 410 451 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 365 404 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 498 541 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 304 343 IPR001680 GO:0005515
Vvi4g0618 1057 SMART WD40_4 813 853 IPR001680 GO:0005515
Vvi4g0618 1057 SMART Lish 3 35 IPR006594 GO:0005515
Vvi4g0618 1057 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 460 IPR001680 GO:0005515
Vvi4g0618 1057 SMART ctlh 33 91 IPR006595 -
Vvi4g0618 1057 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 2 1052 IPR027728 GO:0006355
Vvi4g0618 1057 Gene3D - 708 1043 IPR015943 GO:0005515
Vvi4g0618 1057 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 863 895 - -
Vvi4g0618 1057 SUPERFAMILY WD40 repeat-like 297 404 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0618 Vvi-Chr4 6201406 6209544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0618 377 612 Miscellaneous Gene Families AT5G08390 21.757 6.89e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0618 - - vvi:100254390 2065.04