Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g1193 . . . . . . . . Aev04g0794 . Ahy20g0793 . Aip10g00793 . . . . . . . . . . . . . Bva13g00881 Bva14g01055 . . . . . . Dod03g0190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g4035 Mal7g3816 . . . . . . . Mtr4g3183 . . . . . . . Psa7g2297 . . . . . . . . . . . . . . . . . . . Sto2g2751 Sto13g2518 Tpr3g1639 . . . Tsu02g01601 . . . . . . . . . . . . .
Vvi3g1194 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1197 . . . . . . Aed10g2080 . Aev04g0793 . Ahy20g0792 . Aip10g00792 . . . . . . . . . . . . . Bva13g00883 Bva14g01056 . . Cca09g01453 . . . . . . . . . . . Gma08g00664 . . . . . . . Lal9g0082 . . . . . . . . . . . . . . . . . . . . . . Lja4g4033 Mal7g3813 . . . . . . . Mtr4g3182 . . . . . . . Psa7g2294 . . . . . . . . . . . . . . . . . Ssu5g1909 . Sto2g2752 Sto13g2519 Tpr3g1641 . . . Tsu02g01603 . . . . . . . . . . . . .
Vvi3g1198 . . . . . . . . . . . . . . . . . . Apr3g1984 . . . . . . . . Bva14g01057 . . . . . . . . . . . . . . Gma08g00666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g4032 Mal7g3811 . . . . . . . Mtr4g3181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g1642 . . . Tsu02g01610 . . . . . . . . . . . . .
Vvi3g1199 . . . . . . Aed10g2083 . . . . . . . . . . . Apr3g1985 . . . . . . . . Bva14g01058 . . Cca09g01454 . . . . . . . . . . . Gma08g00667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g4030 . . . . . . . . Mtr4g3180 . . . . . . . Psa7g2292 . . . . . . . . . . . . . . . . . Ssu5g1913 . Sto2g2754 Sto13g2523 Tpr3g1643 . . . Tsu02g01611 . . . . . . . . . . . . .
Vvi3g1200 . . . . . . Aed10g2084 . . . . . . . . . . . Apr3g1986 . . . . . . . Bva13g00884 Bva14g01060 . . Cca09g01455 . . . . . . . . . . . Gma08g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g4029 Mal7g3809 . . . . . . . Mtr4g3179 . . . . . . . Psa7g2290 . . . . . . . . . . . . . . . . . Ssu5g1914 . Sto2g2755 Sto13g2524 Tpr3g1644 . . . Tsu02g01612 . . . . . . . . . . . . .
Vvi3g1201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1202 . . . . . . Aed10g2087 . . . . . . . . . . . Apr3g1990 . . . . . . . Bva13g00885 Bva14g01061 . . Cca09g01459 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g4028 . . . . . . . . Mtr4g3178 . . . . . . . Psa7g2289 . . . . . . . . . . . . . . . . . Ssu5g1918 . . Sto13g2525 Tpr3g1646 . . . Tsu02g01613 . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g1193 Chr3 16969019 16983555 -
Aev Aev04g0794 Chr04 4866793 4869430 +
Ahy Ahy20g0793 Chr20 10076226 10079704 +
Aip Aip10g00793 Chr10 9623496 9626912 +
Bva Bva13g00881 Chr13 4116252 4120535 -
Bva Bva14g01055 Chr14 5056616 5059582 -
Dod Dod03g0190 Chr03 2022281 2025127 -
Lja Lja4g4035 Chr4 73481907 73486963 +
Mal Mal7g3816 Chr7 103971560 103977466 +
Mtr Mtr4g3183 Chr4 45280845 45286255 +
Psa Psa7g2297 Chr7 163250650 163257302 +
Sto Sto2g2751 Chr2 41210864 41214388 -
Sto Sto13g2518 Chr13 31382585 31386865 -
Tpr Tpr3g1639 Chr3 14573354 14579241 -
Tsu Tsu02g01601 Chr02 14066481 14072282 -
Vvi Vvi3g1194 Chr3 16999667 17005170 -
Vvi Vvi3g1195 Chr3 17028553 17033848 +
Vvi Vvi3g1196 Chr3 17152852 17153981 -
Vvi Vvi3g1197 Chr3 17161781 17166958 +
Aed Aed10g2080 Chr10 24552275 24562585 +
Aev Aev04g0793 Chr04 4862776 4866022 +
Ahy Ahy20g0792 Chr20 10072391 10075542 +
Aip Aip10g00792 Chr10 9619923 9622955 +
Bva Bva13g00883 Chr13 4124644 4127117 -
Bva Bva14g01056 Chr14 5061417 5064450 -
Cca Cca09g01453 Chr09 37800516 37806103 +
Gma Gma08g00664 Chr08 5497373 5503851 +
Lal Lal9g0082 Chr9 536948 538374 -
Lja Lja4g4033 Chr4 73449291 73454707 -
Mal Mal7g3813 Chr7 103947189 103957443 -
Mtr Mtr4g3182 Chr4 45265980 45269588 -
Psa Psa7g2294 Chr7 163059467 163063276 -
Ssu Ssu5g1909 Chr5 55981856 55984596 +
Sto Sto2g2752 Chr2 41217041 41221481 -
Sto Sto13g2519 Chr13 31388198 31392003 -
Tpr Tpr3g1641 Chr3 14611716 14639107 -
Tsu Tsu02g01603 Chr02 14085556 14090506 +
Vvi Vvi3g1198 Chr3 17168533 17168883 -
Apr Apr3g1984 Chr3 35873814 35889081 +
Bva Bva14g01057 Chr14 5067536 5071085 -
Gma Gma08g00666 Chr08 5524699 5528365 +
Lja Lja4g4032 Chr4 73438021 73443856 -
Mal Mal7g3811 Chr7 103921683 103923188 +
Mtr Mtr4g3181 Chr4 45247936 45254795 +
Tpr Tpr3g1642 Chr3 14648950 14656917 -
Tsu Tsu02g01610 Chr02 14160000 14166409 -
Vvi Vvi3g1199 Chr3 17178182 17181964 -
Aed Aed10g2083 Chr10 24582485 24586532 -
Apr Apr3g1985 Chr3 35897288 35902770 +
Bva Bva14g01058 Chr14 5072551 5076909 -
Cca Cca09g01454 Chr09 37809922 37815975 -
Gma Gma08g00667 Chr08 5529292 5533481 -
Lja Lja4g4030 Chr4 73339256 73357590 -
Mtr Mtr4g3180 Chr4 45236390 45245655 +
Psa Psa7g2292 Chr7 163009358 163013108 -
Ssu Ssu5g1913 Chr5 56054940 56055419 -
Sto Sto2g2754 Chr2 41227731 41231785 -
Sto Sto13g2523 Chr13 31408266 31411310 -
Tpr Tpr3g1643 Chr3 14675804 14680048 -
Tsu Tsu02g01611 Chr02 14169345 14177057 -
Vvi Vvi3g1200 Chr3 17193257 17218628 -
Aed Aed10g2084 Chr10 24593324 24597880 -
Apr Apr3g1986 Chr3 35918351 35921705 -
Bva Bva13g00884 Chr13 4130481 4133806 -
Bva Bva14g01060 Chr14 5086786 5091311 -
Cca Cca09g01455 Chr09 37833419 37840277 -
Gma Gma08g00668 Chr08 5536637 5541936 -
Lja Lja4g4029 Chr4 73318684 73322475 +
Mal Mal7g3809 Chr7 103861886 103865927 +
Mtr Mtr4g3179 Chr4 45218494 45222667 +
Psa Psa7g2290 Chr7 162817207 162820324 -
Ssu Ssu5g1914 Chr5 56055660 56061271 -
Sto Sto2g2755 Chr2 41237666 41249387 -
Sto Sto13g2524 Chr13 31413573 31416873 -
Tpr Tpr3g1644 Chr3 14693460 14697616 -
Tsu Tsu02g01612 Chr02 14182059 14219632 -
Vvi Vvi3g1201 Chr3 17241385 17241726 +
Vvi Vvi3g1202 Chr3 17271807 17276119 -
Aed Aed10g2087 Chr10 24621338 24625641 -
Apr Apr3g1990 Chr3 35951332 35955404 -
Bva Bva13g00885 Chr13 4137111 4141044 -
Bva Bva14g01061 Chr14 5092365 5095621 -
Cca Cca09g01459 Chr09 37893470 37898588 -
Lja Lja4g4028 Chr4 73310467 73314979 +
Mtr Mtr4g3178 Chr4 45212071 45215795 +
Psa Psa7g2289 Chr7 162805747 162808529 +
Ssu Ssu5g1918 Chr5 56194254 56204785 -
Sto Sto13g2525 Chr13 31422778 31426199 -
Tpr Tpr3g1646 Chr3 14703368 14717613 -
Tsu Tsu02g01613 Chr02 14224086 14268057 -