Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1196 ATGAAATGGAGAGTTGAAAGGTTGAAGGATTTTGATGAGAATGCAGTTTCTCAAAACAATGATGAGGTATTATACGAAGTCAATGCAAATTCTGAGAATTGGATGATTGTCGGGAGGAAGAGAGGCCATGTATCACTCTCAACAAAGCAAGGTTCGAGGATAGTTATTTCTATTTTGTGCATGCCACTGATGGCCGGATACGTACATCCCCCAAAGCTTGGGCTTCCAAACATTGATGAGGCAAATATAAGTTGTAACCCTGCTGGCCCCCACCTGGTCTGTGTTTTGCCTCCTGTTTTCAGCTCTTCTTTCTGTATTCCAGCATGA 327 0.4281 MKWRVERLKDFDENAVSQNNDEVLYEVNANSENWMIVGRKRGHVSLSTKQGSRIVISILCMPLMAGYVHPPKLGLPNIDEANISCNPAGPHLVCVLPPVFSSSFCIPA* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1196 108 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 13 75 IPR022233 -
Vvi3g1196 108 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 1 107 IPR045126 GO:0048193|GO:1990071
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1196 Vvi-Chr3 17152852 17153981 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1196 K20307 - vvi:109123639 222.246