Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1918 ATGGCGACGGCAGCAATAGTGGCAACAACAACAGTGATGGGGGTAGCGACATCGGTGGTGGTGATAGcagtggtaatggtggtggcagtgacggcgacaatagtggtggcaacaatggtggtggtagtggcagtgGCGGTGGAAGCggcaacaatggtggtctcAGAAGAgTTTTCTAACATTGTAAAGCTTAAGTCCAACCAGGAGTTTGTTACCACAGTTGATGAAGAAGCAATCATCAAGTCCAAAGAAAGAAACACGAGTACTAAGACAAAGGAGGGGAGCATCTTCCTGACATGGGAGGATTTGCAGGTCACTGTTCCAAATGGAAGGAATGGTAGGAAACCAATTCTTAAGGGTCTAACCGGTTATGCCAAGCCAGGGCAGCTCTTGACCATAATGGGTCCTTCTGGCTGTGGCAAGTCCACACTTCTTGATGCTTTAGCAGGAAGGCTGGTTTCAAGCACCAAGCAAACAGGGAAAATTCTAATCAATGGCCACAGACATGCACTGGCTTATGGAACATCTTTTTTTGCTTCAAATGGCTTTCCTTGTCCACCTCTCCACAACCCTTCGGATCATTTCTTGAGGATCATAAACAAGGATTTCAAACTGGATGATGAAGAATGCTTCCATATAACAGTACCCAAAGAAAAAGCAGTTGATATCCTTGTGGAGTTTTATAAATCTTCTGAAATTAGTAACCAAGTTCAGAAAGAAGTAGCAGCAATAGGTGAAAGTGAATATGGTTTCATGGAGAGGAGCAGAACACAAGCTGCATTTCTTACTCAGTGTCACATTCTTTTGAGAAGATCTTCTGTGCACCTGTTTCGTGATGTAAGCAATTATTGGTTACGTCTAGCTATGTTTGTTGTAGCAGCTATTAGTCTGGGCACCATTTTCTTTGATGTTGGTTCAAGAAATGCATCTATCCAGGCTAGAGGGTCACTGGTCTCTTTTGTTGCTTCAGTCCTGACTTTCATTACCCTTCTTGGTGGATTCCCTTCATTTGTGGAACAAATGAAGGTATTTCAACGTGAGAGATTAAATGGGCATTATGGTGTTGCTGCTTTTGTCATTAGCCACACGTTATCTCCTATTCCGTATATGGACTTGAACGTTGCCTATACTTTTCTTCTGTTACTTGCCTGTATATTGTGGGTTGAAAGCCTCATGATGGTTGCTTCAAGCATCTTCCCCAATCCCAACGCGGGTATCACTGTCTCCGGTGGAATTATGGGAATCATGATTTTAACCGGCGGATTCTTTCGCCTGCCAAATGATCTTCCCAAACCATTTTGGAAATACCCTATGTACTACGTTTCCTTCCACAAATATGCCTTCCAAGGGTTGTTCAAGAATGAGTTTATTGGTTTGAAGTTGGCTAGTGATCAAGATGGAGGTACCTACCTAAGTGATAAAGAAATACTAACAAAGATATGGCAAGTGGAAATGGGTCACTCAAAATGGGTTGATCTTGCTATCATGCTGGGAACAATTGTTTTGTATAGACTTGTGTTCTTGGCAATCATTAAGAGCAAGGAGAAGATGAAGGCTTGCAGGCCAAGagttaattacttaattaatgcCCAAAACTTTGggaagtaa 1608 0.393 MATAAIVATTTVMGVATSVVVIAVVMVVAVTATIVVATMVVVVAVAVEAATMVVSEEFSNIVKLKSNQEFVTTVDEEAIIKSKERNTSTKTKEGSIFLTWEDLQVTVPNGRNGRKPILKGLTGYAKPGQLLTIMGPSGCGKSTLLDALAGRLVSSTKQTGKILINGHRHALAYGTSFFASNGFPCPPLHNPSDHFLRIINKDFKLDDEECFHITVPKEKAVDILVEFYKSSEISNQVQKEVAAIGESEYGFMERSRTQAAFLTQCHILLRRSSVHLFRDVSNYWLRLAMFVVAAISLGTIFFDVGSRNASIQARGSLVSFVASVLTFITLLGGFPSFVEQMKVFQRERLNGHYGVAAFVISHTLSPIPYMDLNVAYTFLLLLACILWVESLMMVASSIFPNPNAGITVSGGIMGIMILTGGFFRLPNDLPKPFWKYPMYYVSFHKYAFQGLFKNEFIGLKLASDQDGGTYLSDKEILTKIWQVEMGHSKWVDLAIMLGTIVLYRLVFLAIIKSKEKMKACRPRVNYLINAQNFGK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1918 535 Pfam ABC-2 type transporter 263 456 IPR013525 GO:0016020|GO:0140359
Ssu5g1918 535 Pfam ABC transporter 118 168 IPR003439 GO:0005524
Ssu5g1918 535 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 176 519 - -
Ssu5g1918 535 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 176 519 - -
Ssu5g1918 535 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 59 176 - -
Ssu5g1918 535 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 59 176 - -
Ssu5g1918 535 SMART AAA_5 127 282 IPR003593 -
Ssu5g1918 535 Gene3D - 62 212 IPR027417 -
Ssu5g1918 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 193 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1918 Ssu-Chr5 56194254 56204785 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1918 K05681 - gmx:100784793 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1918 5 56194254 56204785 Ssu5g1918 5 56194254 56204785 ECH