Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1909 ATGAAGCACACAGAGAAGATTCTAATCAATGGCCAGAAACAAGCACTGGCCTACGGGACATCATTTTTTGCTTCAAATGGTTTCCCTTGCCCAACTCTCCACAATCCTTCTGATCACTACTTGAGGATCATAAACAAAGATTTCGAACAGGATGCTGaagaaggccatggtaagggagTAACTACAGAAGAAGCAATTGGTACCCTTGTAAAGTCTTACAGATCGTCTCAAATTAGAAAACAAGTCCAAAAGGAAGTGGAAAAAATAGGTGAAATTGATTCTGGCGCAATAAGGAAGCAAAGGATTCATGCTTCATTTGGCACTCAATGCCTCGTTCTTCTAAGAAGATCTTCTTTGCAATTGTTTCGTGACATAAGCAATTACTGGTTGCGTTTAGCTGTGTTCATCGTAATAGCCATAAGCATTGGCTCTATCTACTATGACATAGGCACAAGTAATGGCTCTATTCAGGGGAGAGGTTCGCTgctcatatttttcatttcagtTCTGACTTTCATGACCCTTGTTGGTGGATTCTCtccacttttggaggaaatgaaGGTATTTGAACGAGAGAGGTTGAATGGGCACTATGGTATCACGGCATTTCTCGTAGGCAACATATTTTCTGCTGCTCCTTACATGCTAATGGTCTCTCTTATTCCCGGAGGAATAGCTTACTACCTTTGTGGGCTGCACAAAGGACTAGAACGCTTCTTGTACTTCACTTCTTTGCTATTTGCCATAGTGATGTGGGTTGAGAGCCTTATGTTGGTTGTTGGGAGTGTCTCCCCCAACTATATAATAGGCATGTTCCTTGCTGGTGGAGTTGAGGGACTCATGATTTTAACAGGCGGTTTCTATCGACTGCCAAATGATCTTCCCAAACCATTATGGAAATACCCTTTACACTATGTTTCCTTCCTCAAGTATACCTTCCAAGGATCATTCAAGAACGATTTTGATGGCTTAACATTTTCTATAGACCAAGATGGAGGCACCAGAACCATCAGTGGTAGACAAGTACTAATTGACACATGGCACGTGGAAATGGGTCACTCTAAGTGGGTTGATCTTGCTGTCATGTTTGGAATGATTGTTCTGTATCGAGTTCTGTTCTTGGCCATCACTAAGTGCAAGGAGAAGCTGAAGCCTTTTGTTGCATCCATTAGTGCTCGTCGAGCATAA 1188 0.4007 MKHTEKILINGQKQALAYGTSFFASNGFPCPTLHNPSDHYLRIINKDFEQDAEEGHGKGVTTEEAIGTLVKSYRSSQIRKQVQKEVEKIGEIDSGAIRKQRIHASFGTQCLVLLRRSSLQLFRDISNYWLRLAVFIVIAISIGSIYYDIGTSNGSIQGRGSLLIFFISVLTFMTLVGGFSPLLEEMKVFERERLNGHYGITAFLVGNIFSAAPYMLMVSLIPGGIAYYLCGLHKGLERFLYFTSLLFAIVMWVESLMLVVGSVSPNYIIGMFLAGGVEGLMILTGGFYRLPNDLPKPLWKYPLHYVSFLKYTFQGSFKNDFDGLTFSIDQDGGTRTISGRQVLIDTWHVEMGHSKWVDLAVMFGMIVLYRVLFLAITKCKEKLKPFVASISARRA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1909 395 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 21 386 - -
Ssu5g1909 395 Pfam ABC-2 type transporter 108 319 IPR013525 GO:0016020|GO:0140359
Ssu5g1909 395 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 21 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1909 Ssu-Chr5 55981856 55984596 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1909 K05681 - gmx:100790102 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1909 5 55981856 55984596 Ssu5g1909 5 55981856 55984596 ECH