Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4030 ATGTGCATGGGAAAGCATGGAAGCAAACCAATTCTTCAGGGTCTAACTGGTTATGCCAAGCCAGGGAAGCTCTTGGCTATCATGGGACCCTCTGGTTGTGGAAAATCTACACTTCTTCATGCTTTAGCAGGTATAGCATATGTGACACAAGATGATACCTTAATGACAACCTTAACAGTTAGAGAAGCAGTGCATTATTCAGCTAAACTTCAGTTGCCTGATTCCCTTTCCAAGGAAGAGAAGAAAGAGAGAGCAGAGTTCACAATCAGAGAAATGGGACTCCAAGGTGTCGTTAACACAAGAATTGGAGGTTGGGGAATTAAAGGCATTAACGGCGGTAAGAAAAGGCGACTGAGCATTTGCATAGAGATCCTAACTCGCCCTAAACTTCTGTTTCTGGATGAACCAACTAGTGGATTGGATAATGGCATTCAGAGGACTATTATTGCCTCAATTGATCAGCCTAGTTCTGAAGTTTTTCAACTCTTCCACAACCTTTGCCTTCTATCTTCAGGGAGTACAGTTTATTTTGGACCTGCTTCTGCTGCATCTGAGTTTTTCGATTCAAATGGTTTTCCTTGTCCTACCCTCCAGAATCCATCTGATCATTTGCTTAAAACTATAAACAAGGATTTTGAGCAGGACCCTAATCCAACAAACAAGAGGAGAAAGCATGTTGGCTTCCTTAATCAATGCTTAGTTCTTACCAAAAGATCATCTGTCAATATGTTTCGCGATCTAGGCTATTACTGGTTACGCCTTGCCGTATATATTGCATTGACTACAAGTTTAGCCACTGTCTTCTATGATCTTGGTACAACAAATGGTTCAATTAAGGATAGAATTTCACTCCTCATGTTTGTGTCTACATTCATAACTATGATGACCATTGGTGGATTCCCTTCCTATGTGGAAGACATGAAGGTATTTGAACGTGAAAGACTACATGGGCATGATGGTGTTACTGCATATGTTATTGGGAACACTTTTTCATCCATCCCATACTTGTTTTATTACCCTCCTGGTCTTCAGAGAGGATATGTGCACTTTTTGTATTTTCTCTGTGTTCTATTTTCTTGTCTAATGATAGTAGAGAGCCTTATGATGATAGTTGCAAGTATTGTTCCAAACTTTCTAATAGGTATCATAACTGGTTCTGGAATCCAAGGAATCATGATATTGGGAGGAGAATTCTTCAAATTGCCAAATGATCTTCCTAACCCATTTTGGAGATACCCATTGTTCTATGTTGCTTTCCATAGGTATGCTTACCAAGGAATGTTCAAAAAAGAATTTGAAGGACTCAAATTTTCTAGAAATGATGAAGTTTGTGGGGGTGGCTCATCATCAAATTACATTAGTGGTGAAGAGATTCTGAGAAATGAAAGGCAAGTCGACTTGAGTCACTCAAAATGGGTTGATCTTAGAATCTTGCTGGCCATGATTGTTCTGTTTCAAGTGCTATTTTTTGTGATAATCAAAGCCACTGAGAAGGTAAAACCCATTGTTGCATCATTCTTATCAGCGCCTTCCAAGAAATCGATTCAGATCATGGAGAACCCAAATGTCACTTGGCCTACATAA 1584 0.3952 MCMGKHGSKPILQGLTGYAKPGKLLAIMGPSGCGKSTLLHALAGIAYVTQDDTLMTTLTVREAVHYSAKLQLPDSLSKEEKKERAEFTIREMGLQGVVNTRIGGWGIKGINGGKKRRLSICIEILTRPKLLFLDEPTSGLDNGIQRTIIASIDQPSSEVFQLFHNLCLLSSGSTVYFGPASAASEFFDSNGFPCPTLQNPSDHLLKTINKDFEQDPNPTNKRRKHVGFLNQCLVLTKRSSVNMFRDLGYYWLRLAVYIALTTSLATVFYDLGTTNGSIKDRISLLMFVSTFITMMTIGGFPSYVEDMKVFERERLHGHDGVTAYVIGNTFSSIPYLFYYPPGLQRGYVHFLYFLCVLFSCLMIVESLMMIVASIVPNFLIGIITGSGIQGIMILGGEFFKLPNDLPNPFWRYPLFYVAFHRYAYQGMFKKEFEGLKFSRNDEVCGGGSSSNYISGEEILRNERQVDLSHSKWVDLRILLAMIVLFQVLFFVIIKATEKVKPIVASFLSAPSKKSIQIMENPNVTWPT* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4030 527 Gene3D - 3 188 IPR027417 -
Lja4g4030 527 Pfam ABC transporter 13 138 IPR003439 GO:0005524
Lja4g4030 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 188 IPR027417 -
Lja4g4030 527 Pfam ABC-2 type transporter 154 209 IPR043926 GO:0140359
Lja4g4030 527 Pfam ABC-2 type transporter 231 429 IPR013525 GO:0016020|GO:0140359
Lja4g4030 527 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 221 524 - -
Lja4g4030 527 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 234 IPR003439 GO:0005524
Lja4g4030 527 SMART AAA_5 21 232 IPR003593 -
Lja4g4030 527 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 46 215 - -
Lja4g4030 527 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 46 215 - -
Lja4g4030 527 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 4 44 - -
Lja4g4030 527 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 221 524 - -
Lja4g4030 527 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 4 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4030 Lja-Chr4 73339256 73357590 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4030 K05681 - gmx:100813462 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4030 4 73339256 73357590 Lja4g4030 4 73339256 73357590 ECH