Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1914 ATGGCTTGCCTTCATGATGCATCTGTTTCATCTGCTCCTAGATGTGCTTATGAAACTAAACCCAGTCCAAAATCAGTACTCCAGCAAACTGCCCTAGACATTGAAGCCACCACACTAGAAATGGAACCTTTCAGAGGTCCAAGAAAGATACATAGAGGAGAAGGTGCGGGAGAGACTCGGACAGAAGAGATGGGTATCTGCTTGACATGGAAGGATGTATGGGTGACTGCTTCCAGTGGAAAGAATGGAAGCAGATCAATTCTTCAGGGTCTAACAGGTTATGCCAAGCCAGGGCAACTCTTGGCCATAATGGGTCCCTCTGGATGTGGCAAATCTACACTACTTGATACCTTAGCAGGGAGATTAGGTTCAAACACAAGGCAAACCGGGGAGATTCTGATCAATGGTTGCAAACAAGCACTGGCTTATGGAACCTCATTTTTCGCTTCAAATGGTTTTCCTTGTCCTCCTCTCATGAATCCATCTGATCATTTACTGAAAACTATAAACAAGGATTTCGATCAGGACATTGAGGAGGGTTTAGCAGGAACTAGAAACATGCCCACAGAAGAAGTAATCCACATCCTTGTGAGCTCATACAAATCATCTGAAAGGAACCAAGAAGTTCAAAATGAAGTAGCAGTACTATCTAAGAAGGACACCAGTTCAATGGATATGAAGAGAGGGAATGCAGGCTTCCTCAATCAATGCATAGTTCTTACCAAAAGATCGTTCGTGAACATGTATCGTGATCTAGGCTATTATTGGTTACGCCTTGCCATATATATTGCATTGGCTATAAGTTTAGCTACTGTTTTCTATGATTTGGGCACGAGTTATGGCTCAATTAAGGATCGAGGTGCACTTGTTGCATTTGTAAATGGATTCATTACTTTCATGACCATTGGTGGATTCCCTTCCTTTGTGGAAGTCATGAAGGTAATTCAGATTATTGCTCATCAGAGTTTCTTTTCAAAGTATGTAAATAGTCACTAA 996 0.4187 MACLHDASVSSAPRCAYETKPSPKSVLQQTALDIEATTLEMEPFRGPRKIHRGEGAGETRTEEMGICLTWKDVWVTASSGKNGSRSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGEILINGCKQALAYGTSFFASNGFPCPPLMNPSDHLLKTINKDFDQDIEEGLAGTRNMPTEEVIHILVSSYKSSERNQEVQNEVAVLSKKDTSSMDMKRGNAGFLNQCIVLTKRSFVNMYRDLGYYWLRLAIYIALAISLATVFYDLGTSYGSIKDRGALVAFVNGFITFMTIGGFPSFVEVMKVIQIIAHQSFFSKYVNSH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1914 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 159 IPR027417 -
Ssu5g1914 331 Pfam ABC transporter 89 136 IPR003439 GO:0005524
Ssu5g1914 331 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 146 321 - -
Ssu5g1914 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 293 IPR027417 -
Ssu5g1914 331 Gene3D - 51 230 IPR027417 -
Ssu5g1914 331 Pfam ABC-2 type transporter 236 315 IPR013525 GO:0016020|GO:0140359
Ssu5g1914 331 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 147 - -
Ssu5g1914 331 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 1 147 - -
Ssu5g1914 331 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 146 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1914 Ssu-Chr5 56055660 56061271 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1914 K05681 - gmx:112998761 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1914 5 56055660 56061271 Ssu5g1914 5 56055660 56061271 ECH