Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1913 ATGATGATAGTTGCGAGCGTGGTCCCCAACTTTCTAATGGGCATCATAACTGGTGCTGGAATTCAAGGAATCATGCTTTTACTTGGTGGGTTCTTCAAATTGCCAAGCGATATTCCTAAGCCAGTTTGGAGATACCCATTACACTATGTTGCTTTTCATACGTATGCCAACCAAGGAATGTTCAAGAACGAGTATGAAGGACTAAGATTTTCTACAGATAAAGTTGGAGGAGGCTCACACAGATACATAAGTGGTGAAGAGGTTTTGAGAAATACATGGCAAGTTGACATGAGTTACTCGAAGTGGGTTGATCTTGCAATCTTGCTAGGGATGACTGTTGTGTATcgagttttgtttttggttatCATCAAGATTAAAGAGAAGGTGAAGCCCGTTGTTGTATCATTATCGTGCATGTCAGCGTCTCCCAAGCGAGAAATACAGGTCATGGAAAACCCCAACGCCACTCCTTTACATTGA 480 0.4062 MMIVASVVPNFLMGIITGAGIQGIMLLLGGFFKLPSDIPKPVWRYPLHYVAFHTYANQGMFKNEYEGLRFSTDKVGGGSHRYISGEEVLRNTWQVDMSYSKWVDLAILLGMTVVYRVLFLVIIKIKEKVKPVVVSLSCMSASPKREIQVMENPNATPLH 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1913 159 Pfam ABC-2 type transporter 2 65 IPR013525 GO:0016020|GO:0140359
Ssu5g1913 159 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 159 - -
Ssu5g1913 159 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1913 Ssu-Chr5 56054940 56055419 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1913 K05681 - gmx:100794527 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1913 5 56054940 56055419 Ssu5g1913 5 56054940 56055419 ECH