Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1198 ATGACCATGGCTTCTGCAGTCCAACCTAGTAGTAGTGTTAGTGACTTTGAAATTGGCTATGACTCAGCCTCTTTGCAAAGTCATCAGCCCATAGCCAGGGGGGCCCTAGAGGTGGAAACTGTTCCAAGGCCAAACCCTAGGGAGGAGGGTGGTGTTTTCTTGACATGGGAGGATCTGTGGGTGACGGTTTCCGATGGAAAAGGTGGCAGCAGACCCATCCTCCAAGGCCTTACCGGTTATGCCAGGCCAGGCAAGGTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCCACTCTTCTTGATGCATTAGCAGGTGATTTTCTCTTTTTGGCTCTAACAAAATCATGA 351 0.5014 MTMASAVQPSSSVSDFEIGYDSASLQSHQPIARGALEVETVPRPNPREEGGVFLTWEDLWVTVSDGKGGSRPILQGLTGYARPGKVLAIMGPSGCGKSTLLDALAGDFLFLALTKS* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1198 116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 107 IPR027417 -
Vvi3g1198 116 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 41 106 - -
Vvi3g1198 116 Gene3D - 24 111 IPR027417 -
Vvi3g1198 116 Pfam ABC transporter 75 107 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1198 Vvi-Chr3 17168533 17168883 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1198 K05681 - vvi:100254677 141.354