Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0055 . . . . . . Aed1g0483 . Aev10g1260 . Ahy18g1558 . Aip08g01698 . . . . . . . . . . . . . . Bva07g01606 . . Cca10g01209 . . . . . . . . . . . . . . . . . . Lal1g1610 . . . . . . . . . . . . . . . . . . . . . . Lja3g3769 . Mal4g1667 . . . . . . . Mtr2g2476 . . . . . . . Psa5g5382 . . . . . . . . . . . . . . . . . . . . . Tpr7g3325 . . . Tsu02g04179 . . . . . . . . . . . . .
Vvi19g0056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0058 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01608 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0059 . . . . . . Aed1g0485 . Aev10g1261 . . . Aip08g01682 . . . . . . Apr5g0180 . . . . . . . . . . Cca10g01208 . . . Dod10g0863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1664 . . . . . . . Mtr2g2477 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1273 . . . Tpr7g3324 . . . Tsu02g04180 . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Aev Aev10g1261 Chr10 16243999 16256086 -
Aip Aip08g01682 Chr08 33855146 33871861 +
Dod Dod10g0863 Chr10 25237021 25253964 -
Vvi Vvi19g0050 Chr19 560396 563777 +
Vvi Vvi19g0051 Chr19 572786 578895 +
Vvi Vvi19g0052 Chr19 581396 582679 +
Vvi Vvi19g0053 Chr19 605927 606739 +
Vvi Vvi19g0054 Chr19 619242 619421 +
Vvi Vvi19g0055 Chr19 627397 642137 -
Aed Aed1g0483 Chr1 6533097 6536946 -
Aev Aev10g1260 Chr10 16219270 16241593 -
Ahy Ahy18g1558 Chr18 34735319 34744930 +
Aip Aip08g01698 Chr08 34348550 34355522 +
Bva Bva07g01606 Chr07 15446713 15456128 -
Cca Cca10g01209 Chr10 15719631 15729833 +
Lal Lal1g1610 Chr1 18482843 18498363 -
Lja Lja3g3769 Chr3 74340362 74343515 -
Mal Mal4g1667 Chr4 28958620 28978710 +
Mtr Mtr2g2476 Chr2 37264323 37272156 -
Psa Psa5g5382 Chr5 468482244 468491174 -
Tpr Tpr7g3325 Chr7 41340943 41370111 +
Tsu Tsu02g04179 Chr02 49194310 49218178 -
Vvi Vvi19g0056 Chr19 649746 649913 +
Vvi Vvi19g0057 Chr19 655789 656025 -
Vvi Vvi19g0058 Chr19 662168 662759 +
Bva Bva07g01608 Chr07 15462762 15492670 +
Vvi Vvi19g0059 Chr19 669185 677944 +
Aed Aed1g0485 Chr1 6541050 6550098 -
Aev Aev10g1261 Chr10 16243999 16256086 -
Aip Aip08g01682 Chr08 33855146 33871861 +
Apr Apr5g0180 Chr5 1621935 1624543 -
Cca Cca10g01208 Chr10 15682624 15696793 +
Dod Dod10g0863 Chr10 25237021 25253964 -
Mal Mal4g1664 Chr4 28876607 28884506 -
Mtr Mtr2g2477 Chr2 37273310 37281671 -
Ssu Ssu8g1273 Chr8 22882947 22899689 +
Tpr Tpr7g3324 Chr7 41321270 41332563 +
Tsu Tsu02g04180 Chr02 49238178 49274712 -