Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0040 Acco01g3179 Acco08g1211 Accr1g02846 Accr1g02845 Adu07g02305 . . . Aev07g0278 . Ahy17g0473 . Aip07g00412 . Alju02g0851 Alju10g1186 . . . . . . Bach13g00701 . Bisa12g0438 . . . . . . . Dere08g0295 Dere07g1297 Dod08g0334 . Enph3g0868 Enph8g0280 Glsi14g0923 Glsi04g1324 . . . Gma13g02357 . . . . . . Lal2g0644 . . . . . . . . . . . . . . . . . . . . . . . . . Mepo6g02894 . . . Mibi01g0748 Mibi07g1132 . . Phac5g01108 . . Phco9g01869 Prci7g1726 Prci6g1399 Psa5g5374 . . . Pte17g00436 . Pte1g01209 . . . Pvu5g0799 Pvu11g1746 . . . . . Spst11g00500 . . . . . . . . . . . . . . . Vimu5g00444 . . . . . .
Vvi19g0041 . . . . . . Aed1g0480 . . . Ahy17g0472 . Aip07g00411 . . . . . Apr2g0490 . . . . . . . . . . . Cca10g01210 . . . . . . . . . . . Gma12g02179 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa5g5377 . . . . . . . . . . . . . . . . . Ssu8g1279 . . . . . . . . . . . . . . . . . . . . .
Vvi19g0042 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01589 Car01g01945 Car07g02300 . . . . . . . . . . . . . Gma13g02358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr2g2471 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g2761 . . . . . . . . . . . . . . . . . .
Vvi19g0043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2289 . . . . . . . Mtr8g1606 . . . . . . Psa5g5378 . . . . . . . . . . . . . . . . . . . . . . Tpr7g1333 . . . Tsu08g01752 . . . . . . . . . . . .
Vvi19g0044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma13g02360 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr2g2472 Mtr8g1607 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g2762 Tpr7g3329 . . . Tsu02g04177 . . . . . . . . . . . . .
Vvi19g0046 . . . . . . . . . . Ahy18g1565 . Aip08g01710 . . . Amo18g1876 . . . . . . . . . . . . . . . . . Dod10g0859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2291 . . . . . . . Mtr8g1608 . . . . . . Psa5g5379 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0047 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01602 . . . . . . . . . . . . . . . Gma13g02361 . . . . . Lal1g1606 . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1668 . . . . . . . Mtr2g2474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3328 . . . . . . . . . . . . . . . . .
Vvi19g0048 . . . . . . . . Aev10g1258 . Ahy18g1562 . Aip08g01704 . . . Amo18g1862 . . . . . . . . . . . . . . . . . Dod10g0861 . . . . . . . . . . . . . . Lal1g1607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr2g2475 . . . . . . . Psa5g5381 . . . . . . . . . . . . . . . . . . . . . . . . . Tsu02g04178 . . . . . . . . . . . . .
Vvi19g0049 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Ahy Ahy18g1565 Chr18 34975579 34984843 +
Aip Aip08g01710 Chr08 34554843 34564139 +
Amo Amo18g1876 Chr18 42254476 42265747 +
Dod Dod10g0859 Chr10 25052147 25062061 -
Aev Aev10g1258 Chr10 16206024 16214913 -
Ahy Ahy18g1562 Chr18 34878292 34887678 +
Aip Aip08g01704 Chr08 34485342 34494353 +
Amo Amo18g1862 Chr18 41897301 41903614 +
Dod Dod10g0861 Chr10 25065038 25069154 -
Accr Accr1g02845 Chr1 65405670 65407285 -
Vvi Vvi19g0040 Chr19 468979 472321 -
Acco Acco01g3179 Chr01 49265832 49269967 -
Acco Acco08g1211 Chr08 13146830 13151091 +
Accr Accr1g02846 Chr1 65409170 65411935 -
Accr Accr1g02845 Chr1 65405670 65407285 -
Adu Adu07g02305 Chr07 75923900 75929706 -
Aev Aev07g0278 Chr07 1562374 1567860 +
Ahy Ahy17g0473 Chr17 4550250 4553335 -
Aip Aip07g00412 Chr07 3496731 3499817 -
Alju Alju02g0851 Chr02 6364424 6377339 +
Alju Alju10g1186 Chr10 12754988 12763142 +
Bach Bach13g00701 Chr13 12546231 12548882 -
Bisa Bisa12g0438 Chr12 6179145 6184565 -
Dere Dere08g0295 Chr08 5149824 5155557 -
Dere Dere07g1297 Chr07 16740533 16743457 +
Dod Dod08g0334 Chr08 3610146 3617117 +
Enph Enph3g0868 Chr3 30034676 30039218 -
Enph Enph8g0280 Chr8 11370008 11373704 -
Glsi Glsi14g0923 Chr14 10651628 10653992 -
Glsi Glsi04g1324 Chr04 15008659 15013591 +
Gma Gma13g02357 Chr13 38315200 38319621 -
Lal Lal2g0644 Chr2 3864414 3867552 +
Mepo Mepo6g02894 Chr6 40197405 40200482 -
Mibi Mibi01g0748 Chr01 7197660 7200782 +
Mibi Mibi07g1132 Chr07 16363489 16366532 +
Phac Phac5g01108 Chr5 14514311 14517875 -
Phco Phco9g01869 Chr9 43292637 43295168 -
Prci Prci7g1726 Chr7 32514293 32518204 -
Prci Prci6g1399 Chr6 10468959 10472277 +
Psa Psa5g5374 Chr5 468375962 468377506 -
Pte Pte17g00436 Chr17 5745882 5747741 +
Pte Pte1g01209 Chr1 33148189 33151540 -
Pvu Pvu5g0799 Chr5 15838878 15844494 -
Pvu Pvu11g1746 Chr11 43858718 43861084 -
Spst Spst11g00500 Chr11 26825152 26826815 +
Vimu Vimu5g00444 Chr5 4320142 4322118 +
Vvi Vvi19g0041 Chr19 473474 478067 -
Aed Aed1g0480 Chr1 6522140 6525082 -
Ahy Ahy17g0472 Chr17 4541411 4548842 +
Aip Aip07g00411 Chr07 3489271 3495417 +
Apr Apr2g0490 Chr2 5699015 5702835 +
Cca Cca10g01210 Chr10 15766839 15771802 +
Gma Gma12g02179 Chr12 42800465 42806439 +
Psa Psa5g5377 Chr5 468407199 468410224 -
Ssu Ssu8g1279 Chr8 23083470 23085597 +
Vvi Vvi19g0042 Chr19 479812 491484 -
Bva Bva07g01589 Chr07 15315144 15322467 -
Car Car01g01945 Chr01 44150545 44161915 -
Car Car07g02300 Chr07 36423494 36438781 +
Gma Gma13g02358 Chr13 38324127 38339772 -
Mtr Mtr2g2471 Chr2 37169853 37177156 -
Sto Sto4g2761 Chr4 28544412 28553906 -
Vvi Vvi19g0043 Chr19 494404 496540 -
Mal Mal5g2289 Chr5 58650836 58661308 -
Mtr Mtr8g1606 Chr8 23361359 23372781 +
Psa Psa5g5378 Chr5 468429409 468437297 -
Tpr Tpr7g1333 Chr7 14141085 14156064 +
Tsu Tsu08g01752 Chr08 21275030 21284462 -
Vvi Vvi19g0044 Chr19 497996 499726 -
Vvi Vvi19g0045 Chr19 501504 518217 -
Gma Gma13g02360 Chr13 38347067 38359867 -
Mtr Mtr2g2472 Chr2 37199843 37206938 -
Mtr Mtr8g1607 Chr8 23376116 23386543 -
Sto Sto4g2762 Chr4 28563946 28573213 +
Tpr Tpr7g3329 Chr7 41398555 41405301 +
Tsu Tsu02g04177 Chr02 49168526 49175573 -
Vvi Vvi19g0046 Chr19 524806 528866 -
Ahy Ahy18g1565 Chr18 34975579 34984843 +
Aip Aip08g01710 Chr08 34554843 34564139 +
Amo Amo18g1876 Chr18 42254476 42265747 +
Dod Dod10g0859 Chr10 25052147 25062061 -
Mal Mal5g2291 Chr5 58723246 58747116 +
Mtr Mtr8g1608 Chr8 23480101 23493247 +
Psa Psa5g5379 Chr5 468450078 468457337 -
Vvi Vvi19g0047 Chr19 535286 547165 -
Bva Bva07g01602 Chr07 15417724 15425342 -
Gma Gma13g02361 Chr13 38366705 38379640 -
Lal Lal1g1606 Chr1 18445791 18447412 -
Mal Mal4g1668 Chr4 28981707 28989824 +
Mtr Mtr2g2474 Chr2 37218272 37226432 -
Tpr Tpr7g3328 Chr7 41385440 41394468 +
Vvi Vvi19g0048 Chr19 548335 556394 -
Aev Aev10g1258 Chr10 16206024 16214913 -
Ahy Ahy18g1562 Chr18 34878292 34887678 +
Aip Aip08g01704 Chr08 34485342 34494353 +
Amo Amo18g1862 Chr18 41897301 41903614 +
Dod Dod10g0861 Chr10 25065038 25069154 -
Lal Lal1g1607 Chr1 18447705 18449566 -
Mtr Mtr2g2475 Chr2 37232395 37260288 -
Psa Psa5g5381 Chr5 468475161 468479153 -
Tsu Tsu02g04178 Chr02 49180759 49187906 -
Vvi Vvi19g0049 Chr19 557585 558549 -
Ahy Ahy17g0472 Chr17 4541411 4548842 +
Aip Aip07g00411 Chr07 3489271 3495417 +