Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0050 ATGAGCGACAATTTGATGGACAAAGTGACCGCCCTCGGCGAGCGCCTCAAGATCGGAGGGGTCGAGGTGGGTAAAAAGATGAGCGCTGGGATGAGTTCAATGAGCTTCAAGATGAGGGAGCTTTTCCAAGGTCCAAACCAGACGGAGAAAATTGTGGAAGAAGCCACTGCAGAAACCCTAGACGAGCCCGATTGGGCCCTGAACCTTGATCTGTGTGACATGGTCAATAATGATAAGATCAATAGTGTTGAATTGATCCGAGGCATAAAGAAGCGAATCATGCTGAAGAACCCTAGGGTTCAGTACTTGGCCTTGGTATTGCTTGAAACTGTTGTCAAGAACTGTGAGAAGGCATTTTCGGAGGTGGCAGCAGAGAGGGTGCTTGATGAGATGGTGAAACTTATTGATGATCCTCAAACTGTTGTAAATAATCGGAACAAGGTTTTGATTTTGATCGAAGCCTGGGGTGAGTCTGCAAACGAGCTTCGCTATTTGCCTGTTTATGAGGAAACATACAAGAGTCTTAAATCTAGGGGTATCAGGTTCCCTGGTCGTGATAATGAGAGTTTGGCCCCTATATTTACCCCTCCACGCTCGGTTTCGGCTTCAGAATCAAATGCCAATCTTGCCCAAGAAGTTCATCATGATATTCCTGTTCATCGCTTTTCACCAGAACAAACCAAGGAAACATTTGATGTGGCGCGAAATAGCATTGAACTTCTGACTACGGTTTTATCATCTTCTCCGCAACAAGATGCTTTAAAGGATGACTTAACTACCACCCTTGTACAACAGTGTCATCAATCCCAATTCACTGTCCAGAGAATCATTGAGACAGCTGGAGATGATGAGGCACTGCTCTTTGAAGCCTTGAATGTGAATGATGAGATCCAGAAAGTTCTCTCCAAGTATGAGGAGTTGATGAAGCCTTCCGAAGTTCCTCATGAGCCAGAACCCGCTATGATACCTGTTGCTGTTGAGCCTGAAGAATCACCTCGCTATGCAAAAGAAGATTCCCTCATTAGAAAACCAGCCGGTTCTCGAGGGGGGTCCCAGGGAGGTCACCACGATGAAATGATGGATGATCTTGACGAGATGATCTTTGGGAAGAAAGTTGGGGGTACATCGGAAGGAACCCATGATGCCAAGAAGCAGCAATCACCAAAAGATGACCTCATCTCCTTTTGA 1188 0.4596 MSDNLMDKVTALGERLKIGGVEVGKKMSAGMSSMSFKMRELFQGPNQTEKIVEEATAETLDEPDWALNLDLCDMVNNDKINSVELIRGIKKRIMLKNPRVQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKVLILIEAWGESANELRYLPVYEETYKSLKSRGIRFPGRDNESLAPIFTPPRSVSASESNANLAQEVHHDIPVHRFSPEQTKETFDVARNSIELLTTVLSSSPQQDALKDDLTTTLVQQCHQSQFTVQRIIETAGDDEALLFEALNVNDEIQKVLSKYEELMKPSEVPHEPEPAMIPVAVEPEESPRYAKEDSLIRKPAGSRGGSQGGHHDEMMDDLDEMIFGKKVGGTSEGTHDAKKQQSPKDDLISF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0050 395 Gene3D - 219 310 IPR038425 -
Vvi19g0050 395 CDD GAT_GGA-like_plant 230 307 - -
Vvi19g0050 395 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Vvi19g0050 395 PANTHER TOM1-LIKE PROTEIN 1 1 395 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vvi19g0050 395 SUPERFAMILY GAT-like domain 180 310 - -
Vvi19g0050 395 MobiDBLite consensus disorder prediction 376 395 - -
Vvi19g0050 395 MobiDBLite consensus disorder prediction 329 395 - -
Vvi19g0050 395 ProSiteProfiles GAT domain profile. 222 309 IPR004152 GO:0035091|GO:0043130
Vvi19g0050 395 Pfam GAT domain 235 309 IPR004152 GO:0035091|GO:0043130
Vvi19g0050 395 FunFam TOM1-like protein 2 41 200 - -
Vvi19g0050 395 MobiDBLite consensus disorder prediction 354 368 - -
Vvi19g0050 395 Pfam VHS domain 47 179 IPR002014 GO:0035091|GO:0043130
Vvi19g0050 395 SUPERFAMILY ENTH/VHS domain 42 183 IPR008942 -
Vvi19g0050 395 Gene3D - 42 200 IPR008942 -
Vvi19g0050 395 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Vvi19g0050 395 CDD VHS 49 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0050 Vvi-Chr19 560396 563777 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0050 - - vvi:100264036 762.296