Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0055 ATGAGCCTTAAGTCTCTTTCTCTACATGGAAAGTGTAGTAAACTTCTAAATCAAAGAATTCTTGTACTACAAAGTGCTCAAAGCTCAATCTCTGCCGGGGACTGTCCCCAAAGAGCTGGTGAAGCTTCCTTATCTGCAGGAAATTTCTCTTCTTGGGAACCGATCCCGAAAGAGTTGGGAAACATCAGCACTCTTGTAAACCTTACCGTGGAGTTCAATCAGCTTTCGGGTGTTCTTCCTCCAGAGCTGGGGAATCTGTCCAGTATAGAGAAGATGCATCTCACCTCCAACAAGTTTACTGGGGAGTTGCCAGAAACATTTGCAAAGCTTACCACATTGAAGGACTTGAGAATCAGCGACTTGAAAGGAACTGAAGCAACTTTTCCACCATTGAGTAATATGACAAACTTGAATAGACTGATATTGAGGAGTTGCAATCTCAGTGGACCGCTGCCCGACTATCTTGGGCAATGGACAGGCTTGAAAACTTTATACGTGAGCTTCAACAAATTAAGTGGAAAAATTCTAGACAGTTATCTTGGTATATCAAAAATAGACTACATGTATTTGACTGGAAACTTGCTAACTGGACGCATACCCGATTGGATTCTGCAGAAAGGAGAAAACATTGATCTTTCCTACAACAACTTTACGAGTGGAAACTCAGAAGACTGTCAGACTCGGAGTGTGAACTTGTTTGGAAGCTCTTCAGGGAGCAATAACTCTGGAATCGTTTCATGCTTGAGAGGCTTCCCTTGTCCAAAAAATCATTACTCAGTCCATATCAACTGTGGTGGAAAGGAAGTAATTGTTGACAACACAACATACGAAGATGATACATATTCACCTGGAGCTTCCACATATCACAAAAGTGAAACTAACTGGGCGTTTAGCAGCACTGGTTACTTCATGGATGATAGTATTAATACAGACTCCTATATTGCAAACAATAAGTCTATACTCTTGATGAATAATTCTGCACTGTACATGAATGCGCGTCTTTCTGCCCTCTCTCTCACTTATTATGCATTCTGTCTGGGAAACGGAAACTACACGGTAAAACTCCAATTTGCGGAGATTATGTTTACTGACGACAAAACGTATAGCAGCCTTGGAAGGCGCATATTCGATGTTTACATTCAGGGCAACCAGGTTCTGAAGGATTTCAATATTGAGGATGAAGCAGGAGGGGCTGGCCAAGAAATCATAAAAAATTTTACTATAGCCGTGACTAGCAGAACATTGGAGATCCGCTTCTATTGGGCTGGGAAGGGGACGACTGCCATTCCTAGTAGAGGGGTTTATGGTCCTCTTATATCTGCTATTGCTGTGACCCCCAATTTTGTACCTCCCGCAGAAAGTGGAAGTAGTATATCTGCAGGTGCTGTGGTTGGTATTGTGGCTGCAGTAGCACTTCTTCTGCTTCTGGTTCTAGGCGTCCTTTGGTGGAAAGGCTGTCTAAGACATAAAAATACAATGGAACAAGGTGAAGTGGATATGTTCATTAGGTAA 1512 0.4233 MSLKSLSLHGKCSKLLNQRILVLQSAQSSISAGDCPQRAGEASLSAGNFSSWEPIPKELGNISTLVNLTVEFNQLSGVLPPELGNLSSIEKMHLTSNKFTGELPETFAKLTTLKDLRISDLKGTEATFPPLSNMTNLNRLILRSCNLSGPLPDYLGQWTGLKTLYVSFNKLSGKILDSYLGISKIDYMYLTGNLLTGRIPDWILQKGENIDLSYNNFTSGNSEDCQTRSVNLFGSSSGSNNSGIVSCLRGFPCPKNHYSVHINCGGKEVIVDNTTYEDDTYSPGASTYHKSETNWAFSSTGYFMDDSINTDSYIANNKSILLMNNSALYMNARLSALSLTYYAFCLGNGNYTVKLQFAEIMFTDDKTYSSLGRRIFDVYIQGNQVLKDFNIEDEAGGAGQEIIKNFTIAVTSRTLEIRFYWAGKGTTAIPSRGVYGPLISAIAVTPNFVPPAESGSSISAGAVVGIVAAVALLLLLVLGVLWWKGCLRHKNTMEQGEVDMFIR* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0055 503 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 36 487 - -
Vvi19g0055 503 Pfam Malectin domain 259 442 IPR021720 -
Vvi19g0055 503 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 2 123 - -
Vvi19g0055 503 Gene3D Ribonuclease Inhibitor 2 123 IPR032675 -
Vvi19g0055 503 Gene3D Ribonuclease Inhibitor 124 247 IPR032675 -
Vvi19g0055 503 SUPERFAMILY L domain-like 43 219 - -
Vvi19g0055 503 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 257 447 - -
Vvi19g0055 503 Gene3D - 255 447 - -
Vvi19g0055 503 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 124 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0055 Vvi-Chr19 627397 642137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0055 54 495 Receptor kinase-like Gene Family AT1G53420 44.919 7.71e-130 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0055 - - vvi:100250462 747.273