Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0052 ATGGCTAAAGATATTGTCGAGGAATGTGTTGGTTTACCTCTTGCCATCGTCACAACAGCTAAAAGCATGAGACGTGTGCGTGGTATTTATGAATGGAGGAATGCTTTGAATGAATTGAGGGGACGTACTCAAGGGCTCACACTTAACATGGAAGATGATGTGTTTAAGATCTTGGAATTTAGTTACTATCGCTTGAAAGGTGAAGAACTCCGAGAATGTTTGTTGTATTGTGCATTGTTTCCCGAAGATTATGAGATCAAAAGGGTGTCTTTGATCAAATATTGGATTGCCGAGGGGATGGTAGGAGAAATGGAAACAAGGCAAGCAGAGTTTGATAAAGGGCATGCTATACTGAACAAACTTGAAAATGTGTGTTTGTTAGAAAGATGTAGGAATGGAAAATTTGTAAAAATGCATGATGTGATCAAGGATATGGCTATCAACATTTCAAAAAGGAATTCTCGATTCATGGTGAAAACTACTAGAAATCTAAATGAACTCCCGAGTGAGATACAATGGTTAGAAAATCTAGAAAGAGTTTCTTTAATGGGTAGCCGACTTGATGCATTGAAATCAATACCAAACTGCCCTAAACTTTCTATCTTGTTACTTCAAAGTCTCCGTTGTCTAAATATCAGTTTTCCAAATGCCTTCTTTGTGCATATGTCGAACCTCAAAGTTCTGGACTTGTCAAATACAAGAATTCTCTTCCTACCGGATTCTATCTCCAACTTGGTGAATCTTCGAGCTCTATTTCTTTGTCGTTGCTACACATTATTTCATGTACCTTCATTGGCAAAGCTTAAAGAGTTGAGGGAGTTGGATATAAGTGAGAGTGGAATCAGAAAGTTACCAGATGGGATAGAGCAATTGGTCCTCCTTAAAAGCCTTGCTCTCCGAGGTCTATTCATTGCTGATATGTCTCCAAATAGGGTACTGCCCAATCTTCTTCATCTGCAGTGTTTGAGACTTGAAAATATGAGCTTTCCCATTGTAGGAATGGAGGATCTGATTGGATTGAGAAAGTTGGAGATCCTTTGTATCAATCTTTCTAGCCTGCACAAGTTTGGTAGCTACATGAGAACAGAGCACTACCAGAGACTCACCCACTACTACTTCGGAATATGTGAGGGAGTTTGGCCACTTGGTAATTCTCCTAGCAAAGAAGTTGGCATCTTTCAACGATGGGATGGAGTTCCGCGACGTGGAAATTTTCTTGGCAGAGAAGTAGTTTTGTGGAAATGTGAGCTGAAGCAAGGAAGAAAAGACAACGATGACCACTAA 1284 0.398 MAKDIVEECVGLPLAIVTTAKSMRRVRGIYEWRNALNELRGRTQGLTLNMEDDVFKILEFSYYRLKGEELRECLLYCALFPEDYEIKRVSLIKYWIAEGMVGEMETRQAEFDKGHAILNKLENVCLLERCRNGKFVKMHDVIKDMAINISKRNSRFMVKTTRNLNELPSEIQWLENLERVSLMGSRLDALKSIPNCPKLSILLLQSLRCLNISFPNAFFVHMSNLKVLDLSNTRILFLPDSISNLVNLRALFLCRCYTLFHVPSLAKLKELRELDISESGIRKLPDGIEQLVLLKSLALRGLFIADMSPNRVLPNLLHLQCLRLENMSFPIVGMEDLIGLRKLEILCINLSSLHKFGSYMRTEHYQRLTHYYFGICEGVWPLGNSPSKEVGIFQRWDGVPRRGNFLGREVVLWKCELKQGRKDNDDH* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0052 427 Gene3D Ribonuclease Inhibitor 148 261 IPR032675 -
Vvi19g0052 427 PRINTS Disease resistance protein signature 9 23 - -
Vvi19g0052 427 PRINTS Disease resistance protein signature 220 236 - -
Vvi19g0052 427 SUPERFAMILY L domain-like 137 358 - -
Vvi19g0052 427 Pfam NB-ARC domain 1 62 IPR002182 GO:0043531
Vvi19g0052 427 Gene3D - 1 61 IPR042197 -
Vvi19g0052 427 PANTHER DISEASE RESISTANCE PROTEIN RP 2 351 IPR044974 GO:0006952
Vvi19g0052 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 77 IPR027417 -
Vvi19g0052 427 FunFam Probable disease resistance protein At1g63360 62 148 - -
Vvi19g0052 427 Gene3D Ribonuclease Inhibitor 262 391 IPR032675 -
Vvi19g0052 427 Gene3D - 62 147 IPR036388 -
Vvi19g0052 427 SMART LRR_typ_2 222 245 IPR003591 -
Vvi19g0052 427 SMART LRR_typ_2 268 291 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0052 Vvi-Chr19 581396 582679 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0052 K13459 - vvi:100246887 854.744