Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0060 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0061 . . . . . . . . Aev10g1262 . . . Aip08g01675 . . . . . . . . . . . . . . Bva07g01609 . . . . . . Dod10g0869 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr2g2478 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3323 . . . . . . . . . . . . . . . . .
Vvi19g0062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0064 . . . . . . Aed1g0487 . . . . . Aip08g01673 . . . Amo18g1813 . Apr2g0489 . . . . . . . Bva09g00967 Bva09g00967 . . Cca10g01207 . . . Dod10g0871 . . . . . Gma06g02061 . Gma12g02178 . . . . . . . . . Lal1g0621 . . . . . . . . . . . . . . . . . . . . . Mal4g1656 . . . . . . . Mtr2g2479 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1264 . . . Tpr7g3322 . . . Tsu02g04184 . . . . . . . . . . . . .
Vvi19g0065 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0068 . . . . . . . . . . Ahy18g1541 . Aip08g01669 . . . . . . . . . . . . . . Bva07g01610 . . . . . . . . . . . . . . . . . . . . . . Lal2g0643 . . . . . . . . . . . . . . . . . . . . . . Lja3g4896 . . . . . . . . Mtr2g2480 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3320 . . . Tsu02g04186 . . . . . . . . . . . . .
Vvi19g0069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0060 Chr19 715995 718033 +
Vvi Vvi19g0061 Chr19 722696 726103 +
Aev Aev10g1262 Chr10 16261980 16271421 +
Aip Aip08g01675 Chr08 33403764 33408726 +
Bva Bva07g01609 Chr07 15463072 15470399 -
Dod Dod10g0869 Chr10 25544501 25554866 -
Mtr Mtr2g2478 Chr2 37300716 37318646 -
Tpr Tpr7g3323 Chr7 41309296 41319040 +
Vvi Vvi19g0062 Chr19 729521 729718 -
Vvi Vvi19g0063 Chr19 733287 740134 +
Vvi Vvi19g0064 Chr19 748996 751569 +
Aed Aed1g0487 Chr1 6557340 6563754 -
Aip Aip08g01673 Chr08 33296508 33315642 +
Amo Amo18g1813 Chr18 40002574 40005133 +
Apr Apr2g0489 Chr2 5683231 5693319 +
Bva Bva09g00967 Chr09 4969905 4978678 +
Bva Bva09g00967 Chr09 4969905 4978678 +
Cca Cca10g01207 Chr10 15611957 15641742 +
Dod Dod10g0871 Chr10 25717806 25748240 -
Gma Gma06g02061 Chr06 33045859 33060602 +
Gma Gma12g02178 Chr12 42776026 42789265 +
Lal Lal1g0621 Chr1 3957755 3962590 -
Mal Mal4g1656 Chr4 28469351 28476949 +
Mtr Mtr2g2479 Chr2 37324497 37333721 -
Ssu Ssu8g1264 Chr8 22759225 22776104 +
Tpr Tpr7g3322 Chr7 41297133 41308915 +
Tsu Tsu02g04184 Chr02 49341049 49348332 -
Vvi Vvi19g0065 Chr19 763981 764331 +
Vvi Vvi19g0066 Chr19 777319 787494 -
Vvi Vvi19g0067 Chr19 790484 792820 +
Vvi Vvi19g0068 Chr19 793823 799099 +
Ahy Ahy18g1541 Chr18 33386341 33410581 +
Aip Aip08g01669 Chr08 33023689 33043628 +
Bva Bva07g01610 Chr07 15478508 15499055 +
Lal Lal2g0643 Chr2 3843840 3863839 +
Lja Lja3g4896 Chr3 91000057 91011070 +
Mtr Mtr2g2480 Chr2 37386729 37394232 -
Tpr Tpr7g3320 Chr7 41269133 41276735 +
Tsu Tsu02g04186 Chr02 49366861 49375413 -
Vvi Vvi19g0069 Chr19 802611 802772 +
Lal Lal2g0643 Chr2 3843840 3863839 +