Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0171 ATGGCTTCTCTCAGTTTCTCTCCCATCAGAGCCAAACCCTCTGGCGGGGACTTCCGGCCGTTTCGCAGGCAGAGTTTGGCTCGGCCCAGCAGAGTTGCGTTTAGGGTCTTTGCTTCTGAGGGTCAGGCTGAGCCTGATCTGAGTGTCACTGTCAATGGATTGCATATGCCGAATCCTTTTGTTATCGGGTCCGGTCCGCCCGGGACCAATTATACCGTCATGAAGAGGGCTTTTGATGAAGGTTGGGGTGCTGTGATCGCCAAAACGGTGTCTCTGGATGCTGCCAAAGTTATAAATGTAACTCCTCGGTATGCCCGGCTACGAGTAGGAGCAAATGGCTCAGCCAAAGGACAAATTATTGGGTGGGAAAATATTGAACTCATAAGCGATCGGCCTCTTGAAACAATGTTGAAAGAGTTCAAGCAATTAAAAGAAGAGTATCCTGATAGAATACTTATTGCTTCAATCATGGAGGAATATGATAAAGCAGCCTGGGAAGAACTTATCGACCGAGTTGAGCAAACTGGAATTGATGCCCTTGAGATCAATTTTTCATGTCCTCATGGTATGCCAGAGAGAAAAATGGGTGCTGCAGTTGGGCAAGATTGTGCACTTTTGGAGGAGGTTTGTGGATGGATAAATGCAAAAGCCACTGTTCCGGTGTGGGCAAAAATGACTCCTAACATCACTGACATTACACAGCCAGCTAGGGTGGCTCTGAGTTCAGGATGTGAGGGGGTGTCTGCTATTAACACGATCATGAGTGTGATGGGGATCAATCTCAACACCTTACGTCCTGAGCCTTGTGTTGAGGGATACTCAACTCCTGGGGGCTATTCTTGCAAGGCAGTCCATCCCATAGCACTGGGAAAAGTGATGAGCATTGCAAAAATGATGAAGGCTGAATTTGGTGAGGACTACTCGCTCTCTGGTATTGGAGGTGTTGAGACAGGTGGTGATGCTGCCGAATTTATTCTTCTTGGAGCAAACACTGTTCAGGTATGCACTGGTGTTATGATGCACGGTTATGGCCTTGTGAAGAAACTTTGCTCTGAGCTAAAAGATTTCATGAAAATGCACAATTTCTCATCCATAGAAGATTTCAGAGGGGCTTCTCTTGAATACTTTACAACGCACACAGATTTGGTACAAAGGCAGCAAGAAGCAATTCGGCAGAGGAAAGCCATCAGGCAAGGGTTACAGTCTGACAAAGACTGGACAGGAGATGGCTTTGTGAAAGAAAGTGAGAGCATGGTTTCTAACTGA 1266 0.4668 MASLSFSPIRAKPSGGDFRPFRRQSLARPSRVAFRVFASEGQAEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRVGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYDKAAWEELIDRVEQTGIDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDITQPARVALSSGCEGVSAINTIMSVMGINLNTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKAEFGEDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLCSELKDFMKMHNFSSIEDFRGASLEYFTTHTDLVQRQQEAIRQRKAIRQGLQSDKDWTGDGFVKESESMVSN* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0171 421 Pfam Dihydroorotate dehydrogenase 47 357 IPR005720 GO:0005737|GO:0016627
Vvi17g0171 421 Gene3D Aldolase class I 47 363 IPR013785 -
Vvi17g0171 421 CDD DHPD_FMN 46 353 - -
Vvi17g0171 421 SUPERFAMILY FMN-linked oxidoreductases 41 372 - -
Vvi17g0171 421 NCBIfam dihydroorotate dehydrogenase family protein 47 371 IPR005720 GO:0005737|GO:0016627
Vvi17g0171 421 FunFam Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic 47 362 - -
Vvi17g0171 421 PANTHER DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] 42 359 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0171 K00207 - vvi:100249021 847.04