Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07450 ATGTCTTCACTTTCAGATCTCATCAATTTCAATCTTTCAGATTCCACTGAAAAAATCATTGCTGAATACATATGGGTTGGTGGATCTGGCATAGACATTAGAAGCAAAGCTAGGACTCTTCCTGGACCAGTGAGTGACCCTGCAAAACTACCTAAGTGGAACTATGATGGGTCTAGCACAGACCAAGCACCAGGAAAAGATAGTGAAGTTATTTTATATCCACAAGCTATTTTCAAGGACCCATTCAGGAGAGGGAATAATATTCTTGTGATTTGTGATGTTTACACTCCAGCTGGAGAACCATTACCAACAAACAAGAGATACAATGCTGCCAAAATTTTCAGTCACCCTGATGTTGCTGCTGAAGAACCATGGTATGGTATTGAACAAGAGTATACTTTATTGCAAAAAGATATCAATTGGCCATTAGGTTGGCCTATTGGTGGATTTCCAGGAAAACAGGGTCCATATTACTGTGGAACTGGTGCTGATAAAGCTTATGGACGTGACATTGTTGATGCACATTACAAAGCATGTATTTTTGCTGGAATTAACATTAGTGGCATCAATGCAGAGGTTATGCCGGGTCAGTGGGAATTTCAAGTTGGCCCTTCTGTTGGTATTTCTGCTGGAGATGAGATATGGGCCGCTCGCTATATTCTAGAGAGGATAACAGAGATTGCTGGAGTTGTTGTTTCATTTGATCCAAAGCCTATTCCGGGAGATTGGAATGGAGCTGGAGCTCATGCAAACTTTAGCACCAAATCAATGAGAGAAATTGGAGGCTATGAGGTCATCAAGAAGGCCATTGAAAAGCTTGGATTGAGGCACAAGGAACACATTGCGGCTTATGGAGAAGGAAATGAGAGACGCCTCACCGGAAAACATGAAACCGCCGATATCAACACCTTTTCTTGGGGTGTGGCAAACCGTGGAAGTTCAATTAGGGTTGGAAGAGACACAGAAAAAGATGGCAAAGGTTACTTTGAGGATAGAAGGCCAGCTTCTAACATGGACCCCTATGTGGTCACTTCCTTGATTGCTGAAACCACCATTCTATGGAAGAAGCCATGA 1074 0.4246 MSSLSDLINFNLSDSTEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEEPWYGIEQEYTLLQKDINWPLGWPIGGFPGKQGPYYCGTGADKAYGRDIVDAHYKACIFAGINISGINAEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHANFSTKSMREIGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSLIAETTILWKKP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07450 357 Pfam Glutamine synthetase, beta-Grasp domain 22 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vifa1g07450 357 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Vifa1g07450 357 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vifa1g07450 357 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Vifa1g07450 357 FunFam Glutamine synthetase, chloroplastic 1 103 - -
Vifa1g07450 357 SUPERFAMILY Glutamine synthetase, N-terminal domain 15 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vifa1g07450 357 SUPERFAMILY Glutamine synthetase/guanido kinase 103 353 IPR014746 GO:0003824
Vifa1g07450 357 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vifa1g07450 357 PANTHER GLUTAMINE SYNTHETASE 4 354 - -
Vifa1g07450 357 Pfam Glutamine synthetase, catalytic domain 127 253 IPR008146 GO:0004356|GO:0006807
Vifa1g07450 357 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Vifa1g07450 357 FunFam Glutamine synthetase 104 356 - -
Vifa1g07450 357 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Vifa1g07450 357 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 357 IPR008146 GO:0004356|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07450 Vifa-Chr1 1152362879 1152365611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07450 K01915 - gmx:547620 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07450 1 1152362879 1152365611 Vifa1g07450 1 1152362879 1152365611 ECH