Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g0839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g01546 . . . . . . . Pvu2g0400 . . . . . . . . . . . . . Trre9g00197 . . . . . . . . . . . Vivi2g04062 . .
Vvi16g0840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g02653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g01560 . . . . . . . Pvu2g0399 . . . . . Spst2g00170 . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0841 . . . . . Adu05g01200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr5g0160 . . . . . . . . . Pste1g01570 . . . . . . . Pvu2g0398 . . . . . . . . . . . Tpr2g4008 . . . . . . . . . . . . . Vivi2g04061 . .
Vvi16g0842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g02654 . . . . . . . . . . . Mal6g0352 . . . . . . . Mtr5g0161 . . . . . . . . . Pste1g01581 . . . . . . . Pvu2g0397 . . . . . . . . . . . Tpr2g4007 . . . Tsu05g00135 . . . . . . . . . . . .
Vvi16g0843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0844 . . . . . Adu05g01199 . . . . . . . . . . . . . . . Arst3g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g02655 . . . . . . . . . . . Mal6g0350 . . . . . . . Mtr5g0162 . . . . . . . . . Pste1g01589 . . . . . . . Pvu2g0396 . . . . . . . . . . . Tpr2g4006 . . . . . . . . . . . . . Vivi2g04059 . .
Vvi16g0845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g02659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu2g0395 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g0839 Chr16 16398234 16399770 +
Pste Pste1g01546 Chr1 4818394 4819925 -
Pvu Pvu2g0400 Chr2 3749135 3749652 -
Trre Trre9g00197 Chr9 1498455 1499737 +
Vivi Vivi2g04062 Chr2 153558119 153559629 -
Vvi Vvi16g0840 Chr16 16405205 16406519 -
Lasa Lasa2g02653 Chr2 507238264 507239561 +
Pste Pste1g01560 Chr1 4850921 4852465 -
Pvu Pvu2g0399 Chr2 3748310 3748992 -
Spst Spst2g00170 Chr2 1332020 1333299 +
Vvi Vvi16g0841 Chr16 16408469 16409837 -
Adu Adu05g01200 Chr05 17163402 17164762 +
Mtr Mtr5g0160 Chr5 1491321 1492829 +
Pste Pste1g01570 Chr1 4876297 4885675 -
Pvu Pvu2g0398 Chr2 3740200 3740751 -
Tpr Tpr2g4008 Chr2 42491395 42492962 -
Vivi Vivi2g04061 Chr2 153539224 153540759 -
Vvi Vvi16g0842 Chr16 16411948 16413317 -
Lasa Lasa2g02654 Chr2 507248064 507249374 +
Mal Mal6g0352 Chr6 4730280 4731580 -
Mtr Mtr5g0161 Chr5 1495380 1497063 +
Pste Pste1g01581 Chr1 4906132 4908886 +
Pvu Pvu2g0397 Chr2 3739327 3739803 -
Tpr Tpr2g4007 Chr2 42485544 42490850 -
Tsu Tsu05g00135 Chr05 989631 991120 +
Vvi Vvi16g0843 Chr16 16431088 16431258 -
Vvi Vvi16g0844 Chr16 16440652 16441617 -
Adu Adu05g01199 Chr05 17138855 17140668 -
Arst Arst3g01084 Chr3 8256267 8258553 -
Lasa Lasa2g02655 Chr2 507262381 507263678 +
Mal Mal6g0350 Chr6 4695981 4722992 -
Mtr Mtr5g0162 Chr5 1505270 1506992 +
Pste Pste1g01589 Chr1 4924882 4926643 +
Pvu Pvu2g0396 Chr2 3733338 3734917 -
Tpr Tpr2g4006 Chr2 42476405 42478578 -
Vivi Vivi2g04059 Chr2 153462850 153464368 -
Vvi Vvi16g0845 Chr16 16442299 16444078 -
Vvi Vvi16g0846 Chr16 16467015 16468549 -
Lasa Lasa2g02659 Chr2 507427289 507428542 +
Pvu Pvu2g0395 Chr2 3726784 3728413 -
Vvi Vvi16g0847 Chr16 16477097 16478613 -
Vvi Vvi16g0848 Chr16 16491597 16493131 -