Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4008 ATGGTTAGTGTTTCTGAAATTCGTAAGGCTCAAAGGGCTGAAGGCCCTGCTACCATTTTGGCCATTGGTACTGCTAATCCACCTAACAAGGTTGATCAGAGCACATATCCTGATTTTTACTTCAAAATCACTAACAGTGAGCATAAGGCTGAGCTCAAAGAGAAATTTCAACGCATGTGTGACAAATCTATGATCAAGAGCAGATACATGTATCTAACAGAAGAGATTTTGAAAGAAAATCCTAGTCTTTGTGAGTACATGGCACCTTCATTGGACGCTAGGCAAGATATGGTTGTGGTAGAGGTACCTAGACTAGGGAAGGAGGCTGCAGTGAAGGCTATTAAAGAATGGGGTCAACCAAAATCAAAGATTACTCATTTGATCTTTTGCACTACAAGTGGTGTAGATATGCCTGGTGCCGATTACCAGCTCACAAAACTCTTGGGTCTTCGCCCGTATGTGAAGAGGTATATGATGTACCAACAAGGATGTTTTGCAGGTGGGACGGTGCTTCGTTTGGCCAAGGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAAGTAACCGCAGTTACATTCCGTGGCCCTAGTGACACTCACTTGGACAGTCTTGTTGGACAAGCACTATTCGGAGATGGAGCTGCTGCACTTATCGTTGGTTCTGATCCAGTGCCAGAAATTGAAAAACCTATATTTGAGATGGTTTGGACCGCACAAACAATTGCTCCAGACAGTGAAGGTGCCATTGACGGTCATCTTCGTGAAGCTGGACTAACATTTCATCTTCTTAAGGATGTTCCTGGGATTGTCTCAAAGAATATTGATAAAGCATTGGTTGAGGCATTCCAACCATTAAACATCTCTGATTACAACTCAATCTTTTGGATTGCACACCCGGGTGGTCCTGCAATTCTAGACCAAGTAGAGCAAAAGTTAGCCTTGAAGCCTGAAAAGATGAAGGCTACTAGAGATGTACTTAGTGAATATGGTAACATGTCAAGTGCTTGTGTATTGTTCATCTTAGATGAGATGAGAAAGAAATCGGCTCAAAACGGACTTAAAACCACCGGAGAAGGACTCGACTGGGGTGTGTTGTTCGGCTTTGGACCTGGACTTACCATTGAAACCGTTGTTCTTCATAGTGTGGCTATATGA 1170 0.4316 MVSVSEIRKAQRAEGPATILAIGTANPPNKVDQSTYPDFYFKITNSEHKAELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATRDVLSEYGNMSSACVLFILDEMRKKSAQNGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4008 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Tpr2g4008 389 PANTHER CHALCONE SYNTHASE 7 2 388 - -
Tpr2g4008 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Tpr2g4008 389 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Tpr2g4008 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 388 IPR011141 GO:0009058|GO:0016747
Tpr2g4008 389 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Tpr2g4008 389 CDD CHS_like 16 384 - -
Tpr2g4008 389 Gene3D - 236 389 IPR016039 GO:0016746
Tpr2g4008 389 Gene3D - 1 235 IPR016039 GO:0016746
Tpr2g4008 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Tpr2g4008 389 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4008 Tpr-Chr2 42491395 42492962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4008 150 383 Miscellaneous Gene Families AT3G52160 27.004 5.50e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4008 K00660 - gmx:100782897 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4008 2 42491395 42492962 Tpr2g4008 2 42491395 42492962 ECH