Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0252 . . . . Adu05g00827 . Aed11g1762 . . . Ahy15g1077 . Aip05g01118 . . . . . . . Arst5g01395 . . . . . . . . . Cca06g01838 . . . Dod02g1146 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g04020 . . . . . . . . . . . . . Mepo5g00906 . Mesa17g00945 . . . . . Phac2g02570 . Phco4g00260 . . . Psa2g4215 . Pste1g01962 . . . . . . . Pvu2g1671 . . . . . Spst2g00260 . Ssu2g2920 . . . . . Trre9g01062 . . . . . . . Vimu7g02407 . . . Vivi2g03937 . Vra11g0239 .
Vvi2g0253 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g3073 . . . . . . . . . . . . . . . . . . .
Vvi2g0254 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g3072 . . . . . . . . . . . . . . . . . . .
Vvi2g0255 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0256 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g02257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0258 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g02258 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 189 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu05g00827 Chr05 10103394 10107934 +
Arst Arst5g01395 Chr5 14997181 15000243 +
Lasa Lasa7g04020 Chr7 631756031 631761644 +
Mepo Mepo5g00906 Chr5 8857808 8861478 +
Mesa Mesa17g00945 Chr17 12028809 12031770 +
Phac Phac2g02570 Chr2 26849550 26852439 +
Phco Phco4g00260 Chr4 1649777 1651568 -
Psa Psa2g4215 Chr2 423054194 423057277 +
Pste Pste1g01962 Chr1 6117694 6119789 +
Pvu Pvu2g1671 Chr2 30415339 30417108 +
Spst Spst2g00260 Chr2 1984728 1990493 -
Trre Trre9g01062 Chr9 8478410 8481584 +
Vimu Vimu7g02407 Chr7 20619850 20621384 -
Vivi Vivi2g03937 Chr2 151672197 151674797 +
Aed Aed11g1762 Chr11 21083873 21086467 +
Cca Cca06g01838 Chr06 33788656 33792072 +
Ssu Ssu2g2920 Chr2 90532465 90535121 +
Vra Vra11g0239 Chr11 1624094 1627199 -
Vvi Vvi2g0252 Chr2 2093246 2094411 +
Adu Adu05g00827 Chr05 10103394 10107934 +
Aed Aed11g1762 Chr11 21083873 21086467 +
Ahy Ahy15g1077 Chr15 16675843 16679388 +
Aip Aip05g01118 Chr05 16103801 16106686 +
Arst Arst5g01395 Chr5 14997181 15000243 +
Cca Cca06g01838 Chr06 33788656 33792072 +
Dod Dod02g1146 Chr02 14235045 14238878 +
Lasa Lasa7g04020 Chr7 631756031 631761644 +
Mepo Mepo5g00906 Chr5 8857808 8861478 +
Mesa Mesa17g00945 Chr17 12028809 12031770 +
Phac Phac2g02570 Chr2 26849550 26852439 +
Phco Phco4g00260 Chr4 1649777 1651568 -
Psa Psa2g4215 Chr2 423054194 423057277 +
Pste Pste1g01962 Chr1 6117694 6119789 +
Pvu Pvu2g1671 Chr2 30415339 30417108 +
Spst Spst2g00260 Chr2 1984728 1990493 -
Ssu Ssu2g2920 Chr2 90532465 90535121 +
Trre Trre9g01062 Chr9 8478410 8481584 +
Vimu Vimu7g02407 Chr7 20619850 20621384 -
Vivi Vivi2g03937 Chr2 151672197 151674797 +
Vra Vra11g0239 Chr11 1624094 1627199 -
Vvi Vvi2g0253 Chr2 2097386 2099353 +
Bva Bva08g00021 Chr08 118802 122389 -
Sto Sto6g3073 Chr6 37740126 37742915 -
Vvi Vvi2g0254 Chr2 2100886 2102056 -
Bva Bva08g00020 Chr08 116059 117853 +
Sto Sto6g3072 Chr6 37738441 37739046 +
Vvi Vvi2g0255 Chr2 2102180 2102605 -
Vvi Vvi2g0256 Chr2 2105118 2108787 +
Bva Bva11g02257 Chr11 18179884 18182675 +
Vvi Vvi2g0257 Chr2 2111743 2121355 +
Vvi Vvi2g0258 Chr2 2122242 2122926 -
Bva Bva11g02258 Chr11 18182734 18183826 -
Vvi Vvi2g0259 Chr2 2124283 2128287 -
Vvi Vvi2g0260 Chr2 2131965 2133044 -
Vvi Vvi2g0261 Chr2 2133820 2137628 -
Vivi Vivi2g03937 Chr2 151672197 151674797 +
Aed Aed11g1762 Chr11 21083873 21086467 +
Cca Cca06g01838 Chr06 33788656 33792072 +
Ssu Ssu2g2920 Chr2 90532465 90535121 +
Vra Vra11g0239 Chr11 1624094 1627199 -