Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0627 ATGTCAAAAGTCCTTGGCTTTACTGGAATTGATGATTTTTTCCCCGGGGGCTCAATATATGCTAACCCCAAGGAGCGCCGTCTCTTGTTATCTCTCGGCCGTCATGTTGACGTATACTTTCCACCTCAAAAGAAATCACGTATCAGTGCTCCATTGAAGAGATCACACATCAACGATCCATTTCTTCTCAGTGGAGAATGGTTTGAGGCTGAGAAGAAGAAGCCGCAAACATCTATTGAAGATTTGCCAGATGAATGCCTCTTTGAGATCTTCAGAAGGTTGCCTGGAGGTCAAGAGAGGAGCTCATGTGCCTGTGTTTCCAAGCGCTGGCTTTGGCTTCTAAGTAATATTTGCAAGGATGAAATTTGCAGCAACGAAAATAGAAGTTATGAGAATGACGTTAGTGGAGAGGAGGCTGATGTTGAGGAATTTGGGGGTGGTGGATACCTCTCCCGAGACTTGGAAGGAAAGAAAGCGACTGATGTCAGACTTGCTGCTATTGCTGTTGGAACTGCTTCTCGTGGTGGATTGGGAAAGCTTTCAATCCGGGGAGGCAGTTCTGGTTGTGCAGTGACAAATATTGGTCTCAGAGCAGTTTCCCATGGATGCCCTTCTTTAAAGGCTCTTTCTCTTTGGAATGTTACTATGATAGATGATGAAGGCCTGATTGAGATTGCTAGTGGATGTCCCCAGTTAAAGAAGCTTGATCTTTGCCATTGTCCCACAATATCTGATAAGGCTTTGATAGCAGTTGCAAAGAACTGCCCTAACTTGACTGAGTTATCAATCGAATCATGTCCCAAAATTGGTAATGAAGCTCTACAAGCTATTGGGCAGTTTAGCACTAGCCTAAGGTCTTTATCAATAAAAAATTGCACTTGTGTTGGTGATCAGGGAATTGCGAGCCTTTTTTCTTCAGCTGCTTTTCTTCTGACAAAGGTGAAGCTTGAGGCACTGACAATTTCTGACCTCTCTTTAGCTGTTGTCGGACATTATGGTAAGGCAGTTACAGATCTTGCCCTGAAATGCCTCCCTAATGTTAGTGAGAGAGGGTTCTGGCTCATGGGTAACGGCCACGGGTTGCAGAAGTTAAATTCACTCTCAATTGCATCCTGTCAAGGAGTAACGGATAGTGGGCTTGATGCTTTAGGAAGGGGTTGCCCAAATCTCAATCACCTGTATCTCTGCAAAAGTGCATTCCTATCAGACTATGGGTTGGCCTCGTTTTCCAAAGCTGCTTTATCAATTGAGAGCCTAAAATTGGAGGAGTGCCACAGAATCACCCAGCTTGGGTTTTTTGGTGTCCTTTTCAATTGTTGTGCCAAATTGAAGGCCCTTGCATTTATAAGCTGCTTTGGCATCAAGGATCAGAATTTGGTGTTGCCTTCTGTATCTCCTTGCCAATCACTTCAGTCTCTATCAATTCGTAACTGCCCTGGATTTGGTGATGCTACAATGGCTTTGCTGGGAAAGCTTTGCCCTCAGCTGCAGTATGTTGAATTGAGCAGACTTGAGGGAGTTACTGATGTGGGGTTCCTCTCAGTGCTTTTGAATTCTGAGGCTGGTCTGGTTAAAGTTAATCTCAGCCACTGCATAAATTTGACAGATAAAGTTGTTTCCACCATCGCAAATGAGCATGGCTTGACTCTTGAGGTCTTAAATCTTGATGGCTGTAAAAAGATCACCGATGTTAGCTTGATGGCAATTGCTGAAAACTGCCCATTGATCTGGGATCTGGATGTGTCTGAGTCTGCAATTACTGATGCGGGTATCACAGCCTTGGCAGGGGGTGGCATGTTCCATTTGCAGATACTGTCTTTGTCGGGTTGCTCTCTTGTTTCAAACAAGTGCCTTCCTGCTTTGCGAAGTATGGGTGAGACCCTTCTGGGATTAAATATCCGTAACTGCAAGGCAATTAACTGCCGTCCTATTGGGAAGCTCGTGGAACAGCTCTGGATGTGTGACATCCTTGCTTGA 1977 0.4482 MSKVLGFTGIDDFFPGGSIYANPKERRLLLSLGRHVDVYFPPQKKSRISAPLKRSHINDPFLLSGEWFEAEKKKPQTSIEDLPDECLFEIFRRLPGGQERSSCACVSKRWLWLLSNICKDEICSNENRSYENDVSGEEADVEEFGGGGYLSRDLEGKKATDVRLAAIAVGTASRGGLGKLSIRGGSSGCAVTNIGLRAVSHGCPSLKALSLWNVTMIDDEGLIEIASGCPQLKKLDLCHCPTISDKALIAVAKNCPNLTELSIESCPKIGNEALQAIGQFSTSLRSLSIKNCTCVGDQGIASLFSSAAFLLTKVKLEALTISDLSLAVVGHYGKAVTDLALKCLPNVSERGFWLMGNGHGLQKLNSLSIASCQGVTDSGLDALGRGCPNLNHLYLCKSAFLSDYGLASFSKAALSIESLKLEECHRITQLGFFGVLFNCCAKLKALAFISCFGIKDQNLVLPSVSPCQSLQSLSIRNCPGFGDATMALLGKLCPQLQYVELSRLEGVTDVGFLSVLLNSEAGLVKVNLSHCINLTDKVVSTIANEHGLTLEVLNLDGCKKITDVSLMAIAENCPLIWDLDVSESAITDAGITALAGGGMFHLQILSLSGCSLVSNKCLPALRSMGETLLGLNIRNCKAINCRPIGKLVEQLWMCDILA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0627 658 FunFam EIN3-binding F-box protein 1 519 656 - -
Lele25g0627 658 Gene3D Ribonuclease Inhibitor 519 578 IPR032675 -
Lele25g0627 658 Gene3D Ribonuclease Inhibitor 458 518 IPR032675 -
Lele25g0627 658 Gene3D Ribonuclease Inhibitor 579 652 IPR032675 -
Lele25g0627 658 SUPERFAMILY F-box domain 74 116 IPR036047 GO:0005515
Lele25g0627 658 PANTHER UNCHARACTERIZED 361 544 - -
Lele25g0627 658 SUPERFAMILY RNI-like 187 431 - -
Lele25g0627 658 Pfam Leucine Rich repeat 362 383 IPR001611 GO:0005515
Lele25g0627 658 Pfam Leucine Rich repeat 254 277 IPR001611 GO:0005515
Lele25g0627 658 Pfam Leucine Rich repeat 549 570 IPR001611 GO:0005515
Lele25g0627 658 Pfam Leucine Rich repeat 281 303 IPR001611 GO:0005515
Lele25g0627 658 Gene3D Ribonuclease Inhibitor 255 453 IPR032675 -
Lele25g0627 658 SMART fbox_2 82 123 IPR001810 GO:0005515
Lele25g0627 658 Gene3D - 71 123 - -
Lele25g0627 658 FunFam EIN3-binding F-box protein 1 78 115 - -
Lele25g0627 658 Pfam F-box-like 79 110 IPR001810 GO:0005515
Lele25g0627 658 FunFam EIN3-binding F-box protein 1 268 458 - -
Lele25g0627 658 SMART LRR_CC_2 413 438 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 203 228 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 547 572 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 493 518 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 467 492 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 361 386 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 281 306 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 520 545 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 573 597 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 255 280 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 229 254 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 599 627 IPR006553 -
Lele25g0627 658 SMART LRR_CC_2 387 412 IPR006553 -
Lele25g0627 658 Gene3D Ribonuclease Inhibitor 162 254 IPR032675 -
Lele25g0627 658 SUPERFAMILY RNI-like 353 618 - -
Lele25g0627 658 FunFam EIN3-binding F-box protein 1 149 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0627 Lele-ChrLele25 3954023 3956611 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0627 25 3954023 3956611 Lele02g0625 02 3740650 3743114 CCT
Lele25g0627 25 3954023 3956611 Lele04g0644 04 3880299 3882750 CCT
Lele01g0649 01 3794181 3794765 Lele25g0627 25 3954023 3956611 CCT
Lele02g0635 02 3798330 3798911 Lele25g0627 25 3954023 3956611 CCT
Lele03g0648 03 3801987 3805025 Lele25g0627 25 3954023 3956611 CCT
Lele04g0655 04 3944359 3944946 Lele25g0627 25 3954023 3956611 CCT
Lele25g0627 25 3954023 3956611 Lele27g1460 27 20727145 20729713 hybridization
Lele25g0627 25 3954023 3956611 Lele28g0622 28 3966456 3970542 hybridization