Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1460 ATGTCAAAAGTCCTTGGCTTTACTGGAATTGATGATTTTTTCCCCGGGGGCTCAATATATGCTAACCCCAAGGAGCGCAGTCTCTTGTTGTCTCTTGGCCGTCATGTGGATGTATACTTTCCACCTCAAAAGAGATCACGTATCAGTGCTCCATTTAAGAGATCACACATCAACGATCCATTTCTTCTCAGTGGAGAATGGTTTGAGGCTGAGAAGAAGCCGCAAACATCAATTGAAGATTTGCCAGATGAATGCCTCTTTGAGATCTTCAGAAGGTTGCCTGGAGGTCAAGAGAGGAGCTCATGTGCCTGTGTTTCCAAGCACTGGCTTTGGCTTCTAAGTAATATTTGCAAGGATGAAATTTGCAGCAATGAAAAGACAAGTTATGAGAATGACGTTAGTGGAGAGGAGGCTGATGTTGAGGAATTTGGGGGTGGTGGATACCTCTCCCAAGACTTGGAAGGAAAGAAGGCGACTGATGTCAGGCTTGCTGCTATTGCTGTTGGAACTGCTTCTCGTGGTGGATTGGGAAAGCTTTCAATCCGTGGAGGCAATTCTGGTTGTGCAGTGACTAATAGTGGTCTCAGAGCAGTTTCCCATGGATGCCCTTCTTTAAAGGCTCTTTCTCTTTGGAATGTTACTATGATAGATGATGAAGGCCTGATTGAGATTGCTAGTGGATGTCCCCAGTTAAAGAAGCTTGATCTTTGCCATTGTCCCACAATATCTGATAAGGCTTTGATAGCAGTTGCAAAGAACTGCCCTAACCTGACTGAGTTATCAATCGAATCATGTCCCAGAATTGGTAATGAAGGTCTACAAGCTATTGGGCAGTTTAACACTAGCCTAAGGTCTTTATCAATAAAAAATTGCACTTGTGTTGGTGATCAGGGAATTGCGAGCCTTTTTTCTTCAGCTGCTTTTCTTCTGACAAAGGTGAAGCTTGAGGCACTGACAATTTCTGATCTCTCTTTAGCTGTTGTCGGACATTATGGTAAGGCAGTTACAGATCTTGCCCTTAAATGCCTCCCTAATGTTAGTGAGAGAGGGTTCTGGCTAATGGGTAACGGCCACGGGTTGCAGAAGTTAAATTCACTCTCAATTGCATCCTGTCAAGGAGTAACAGATAGTGGGCTTGATGCTTTAGGAAAGGGTTGCCCAAATCTCAAGCACCTGCATCTCTGCAAAAGTGCATTCCTATCAGACTATGGGCTGGCCTCGTTTTCCAAAGCTGCTTTATCAATTGAGAGCCTAAAATTGGAGGAGTGCCACAGAATCACCCAGCTTGGGTTTTTTGGTGCCCTTTTCAATTGTTGTGCCAAATTGAAGGTCCTTGCACTTATAAGCTGCTTTGGGATTAAGAATCAGAATTTGGTGTTGCCTTCTTTATCTCCTTGCCAATCACTTCAGTCTCTATCAATTCGTAACTGTCCCGGATTTGGTGATGCTACAATGGCTTTACTGGGAAAGCTTTGCCCTCAGCTGCAGTATGTTGAATTGAGCAGACTTGAGGGAGTTACTGATGCGGGGTTCCTCTCAGTGCTTTTGAATTCTGAGGTTGGTCTGGTTAAAGTTAATCTCAGCCACTGCATAAATTTGACAGATAAAGTTGTTTCCACCATCGCAAATGAGCATGGCTTGACTCTTGAGGTCTTAAATCTTGATGGCTGTAAAAAGATCACCGATGTTAGCTTGATGGCAATTGCTGAAAACTGCCCATTGATCTGGGATCTGGATGTGTCTGAGTCTGTAATTACTGATGCGGGTATCACAGCCCTGGCTGGTGGTGGCATGTTCCATTTGCAGATGCTGTCTTTGTCGGGTTGCTCTCTTGTTTCAAACAAGAGCCTTCCAGCTTTGCGAAGTATGGGTGAGACCCTTCTGGGATTAAATATCCGTAACTGCAAGGCAATTAACTGCCGTACTATTGGGAAGCTCGTGGAACAGCTCTGGATGTGTGACATCCTCGCTTGA 1974 0.4453 MSKVLGFTGIDDFFPGGSIYANPKERSLLLSLGRHVDVYFPPQKRSRISAPFKRSHINDPFLLSGEWFEAEKKPQTSIEDLPDECLFEIFRRLPGGQERSSCACVSKHWLWLLSNICKDEICSNEKTSYENDVSGEEADVEEFGGGGYLSQDLEGKKATDVRLAAIAVGTASRGGLGKLSIRGGNSGCAVTNSGLRAVSHGCPSLKALSLWNVTMIDDEGLIEIASGCPQLKKLDLCHCPTISDKALIAVAKNCPNLTELSIESCPRIGNEGLQAIGQFNTSLRSLSIKNCTCVGDQGIASLFSSAAFLLTKVKLEALTISDLSLAVVGHYGKAVTDLALKCLPNVSERGFWLMGNGHGLQKLNSLSIASCQGVTDSGLDALGKGCPNLKHLHLCKSAFLSDYGLASFSKAALSIESLKLEECHRITQLGFFGALFNCCAKLKVLALISCFGIKNQNLVLPSLSPCQSLQSLSIRNCPGFGDATMALLGKLCPQLQYVELSRLEGVTDAGFLSVLLNSEVGLVKVNLSHCINLTDKVVSTIANEHGLTLEVLNLDGCKKITDVSLMAIAENCPLIWDLDVSESVITDAGITALAGGGMFHLQMLSLSGCSLVSNKSLPALRSMGETLLGLNIRNCKAINCRTIGKLVEQLWMCDILA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1460 657 SUPERFAMILY F-box domain 74 115 IPR036047 GO:0005515
Lele27g1460 657 SUPERFAMILY RNI-like 318 653 - -
Lele27g1460 657 Gene3D Ribonuclease Inhibitor 156 251 IPR032675 -
Lele27g1460 657 PANTHER UNCHARACTERIZED 360 543 - -
Lele27g1460 657 Gene3D Ribonuclease Inhibitor 517 578 IPR032675 -
Lele27g1460 657 Gene3D Ribonuclease Inhibitor 458 516 IPR032675 -
Lele27g1460 657 Gene3D Ribonuclease Inhibitor 579 653 IPR032675 -
Lele27g1460 657 SMART fbox_2 81 122 IPR001810 GO:0005515
Lele27g1460 657 Gene3D Ribonuclease Inhibitor 252 457 IPR032675 -
Lele27g1460 657 SUPERFAMILY RNI-like 187 429 - -
Lele27g1460 657 FunFam EIN3-binding F-box protein 1 267 457 - -
Lele27g1460 657 FunFam EIN3-binding F-box protein 1 518 655 - -
Lele27g1460 657 Pfam F-box-like 78 109 IPR001810 GO:0005515
Lele27g1460 657 FunFam EIN3-binding F-box protein 1 148 266 - -
Lele27g1460 657 Gene3D - 70 122 - -
Lele27g1460 657 Pfam Leucine Rich repeat 361 382 IPR001611 GO:0005515
Lele27g1460 657 Pfam Leucine Rich repeat 548 569 IPR001611 GO:0005515
Lele27g1460 657 Pfam Leucine Rich repeat 280 302 IPR001611 GO:0005515
Lele27g1460 657 Pfam Leucine Rich repeat 253 276 IPR001611 GO:0005515
Lele27g1460 657 SMART LRR_CC_2 228 253 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 280 305 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 492 517 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 466 491 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 572 596 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 598 623 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 254 279 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 202 227 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 386 411 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 360 385 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 519 544 IPR006553 -
Lele27g1460 657 SMART LRR_CC_2 546 571 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1460 Lele-ChrLele27 20727145 20729713 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0649 01 3794181 3794765 Lele27g1460 27 20727145 20729713 CCT
Lele02g0635 02 3798330 3798911 Lele27g1460 27 20727145 20729713 CCT
Lele03g0648 03 3801987 3805025 Lele27g1460 27 20727145 20729713 CCT
Lele04g0655 04 3944359 3944946 Lele27g1460 27 20727145 20729713 CCT
Lele25g0627 25 3954023 3956611 Lele27g1460 27 20727145 20729713 hybridization
Lele26g0638 26 4051357 4053895 Lele27g1460 27 20727145 20729713 hybridization