Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0625 ATGTCTAAAGTCATCGGCTTCACCGGAGGTGACGATTTTTGCCCTGGGGGATCAATATACACTAATCCAAAGGAATCTAATCTATTGTTGTCTCTTGGCAACCATGTTGATGTTTACTTTCCTCCTCGGAAGAGATCTCGCGTCAAAGCACCTTTTGTTTTTGACGGAGAATGGTTTGAACAGAAGAAGACATCTATCGAAGCTTTGCCAGATGAATGCCTCTTTGAGATCTTTAGAAGGCTACCTGTAGGCCAAGAAAGGGGTGCATGTGCCCGTGTTTCTAAGCGCTGGCTTATGCTTTTAAGCAGTATTTGTAAGGATGAAATCTGCAGCAACAAAATTACCAGATCTGAGAACGAGGTTTGTGAAAAGGTGGTTGATGATCTGGAATTTGGGGGTGAGGGTTACCTGTCGCGGAGCTTGGTAGGTAAGAAGGCGACAGATGTTAGACTTGCTGCCATTGCTGTTGGTACTGCTTCTCGTGGAGGTCTGGGAAAACTTTCAATCCATGGGAGCAATTCAGATCGTGGGGTGACCGACCTAGGTCTCAAGTCTGTTGCCCATGGATGCCCTTCATTAAAGGGGCTTTCACTATGGGATATCGCTACCATCGGTGATGAGGGCCTAATTGCTATCGCTAATGGATGTCATCAGCTAGAGAAGCTGGACCTTTGCAAGTGCCCGACAATTTCTGACAAGGCTTTGATTGCAATTGCAAAGAACTGCCCTCATTTGACTGAGTTATCCATAGAATCATGTCCTAAGATCGGTAATGAAGGTCTACAAGCTATTGGGCAGTTGTGCCCCAATCTGAGGTCTATTTCAATCAAGAACTGCGCCTCTGTTGGTGATCAGGGAATTGCAAGCCTGCTCTCTTCACGTTCTTTCGATTTGGCAAAGGTGAAGCTTCAGGGTCTGGCCATTTCTGACCTCTCTCTCGCAGTTATTGGACACTATGGAAAGGCGGTTACTGATCTTGTCCTATCCTGCCTCCCAAATGTTGGTGAGAAGGGGTTCTGGGTCATGGGTAATGGTCATGGGTTGCAGAAGCTAAAGTCACTCACAATCGCATCCTGCCCTGGAGTTACAGATATCGGGCTTGAATCTGTTGGAAAGGGATGTCCAAATCTCAAACACTTCAGCCTTCGTAAATGCTCATTTCTATCGGACAACGGATTGTTATCATTTGCCAAAGGTGCTCTATCACTTGAGAGCCTGCAATTGGAGGAGTGCCACAGGATCACCCAGCTTGGGTTTTTTGGTGTTATTACCTGTAGTGCAAGATTGAAGGCTCTTGCCCTCATGAGTTGCTTTGGATTCAGAGATCTGAATATGAGATTGCCTCAGGTGTCTCCTTGCAAGTGGCTTCAGTCGCTAACAATCTGTAACTGCCCTGGATTTGGTGATTCTACCTTGGCTGTGCTAGGAAAGTTGTGTCCTCAGCTGCAGCATATTGAATTAAGTCGCCTCGAGGGGGTGACAGATGCTGGGCTGCTTCCACTGATTGAATGCTCTGAGGCTGGTCTGGTTAAGGTTAATCTTAGTGGTTGCATAAATCTTACTGACAAAGTGATCTTATCAATGACCAATAAGCATGGTTGGACACTTGAGATGCTAAATCTTGATGGCTGTAAAAGGATCAGTGATGCTAGCTTGATAGCAATCGCCGGAAATTGCCCATTGGTATCTGATCTTGACATTTCCAAGTGTGAGATCACTGATGCTGGAATTGCAGCCCTGGGAGGTACTGACCAACTGAACTTGCAGGTCCTTTCTTTGGCAGGTTGCTCCTTGGTTTCAGATAGGAGCCTGTCTAGCTTGACGAAACTGGGCCAGACCCTTTTGGGATTGAATATCCAGCAATGCAAAGCAATCAGCAGCAGATCTGTTGACGTGCTTGTGGAACTTCTTTGGAGGTGTGACTTCCTCTTCTGA 1935 0.4636 MSKVIGFTGGDDFCPGGSIYTNPKESNLLLSLGNHVDVYFPPRKRSRVKAPFVFDGEWFEQKKTSIEALPDECLFEIFRRLPVGQERGACARVSKRWLMLLSSICKDEICSNKITRSENEVCEKVVDDLEFGGEGYLSRSLVGKKATDVRLAAIAVGTASRGGLGKLSIHGSNSDRGVTDLGLKSVAHGCPSLKGLSLWDIATIGDEGLIAIANGCHQLEKLDLCKCPTISDKALIAIAKNCPHLTELSIESCPKIGNEGLQAIGQLCPNLRSISIKNCASVGDQGIASLLSSRSFDLAKVKLQGLAISDLSLAVIGHYGKAVTDLVLSCLPNVGEKGFWVMGNGHGLQKLKSLTIASCPGVTDIGLESVGKGCPNLKHFSLRKCSFLSDNGLLSFAKGALSLESLQLEECHRITQLGFFGVITCSARLKALALMSCFGFRDLNMRLPQVSPCKWLQSLTICNCPGFGDSTLAVLGKLCPQLQHIELSRLEGVTDAGLLPLIECSEAGLVKVNLSGCINLTDKVILSMTNKHGWTLEMLNLDGCKRISDASLIAIAGNCPLVSDLDISKCEITDAGIAALGGTDQLNLQVLSLAGCSLVSDRSLSSLTKLGQTLLGLNIQQCKAISSRSVDVLVELLWRCDFLF 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0625 644 Pfam F-box domain 69 106 IPR001810 GO:0005515
Lele02g0625 644 SMART fbox_2 69 110 IPR001810 GO:0005515
Lele02g0625 644 Gene3D - 60 111 - -
Lele02g0625 644 FunFam EIN3-binding F-box protein 1 505 642 - -
Lele02g0625 644 FunFam EIN3-binding F-box protein 1 136 254 - -
Lele02g0625 644 SUPERFAMILY RNI-like 181 641 - -
Lele02g0625 644 SMART LRR_CC_2 559 583 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 479 504 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 400 425 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 506 531 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 190 215 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 216 241 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 374 399 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 242 267 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 533 558 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 348 373 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 453 478 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 268 293 IPR006553 -
Lele02g0625 644 SMART LRR_CC_2 585 610 IPR006553 -
Lele02g0625 644 Gene3D Ribonuclease Inhibitor 255 450 IPR032675 -
Lele02g0625 644 Gene3D Ribonuclease Inhibitor 136 254 IPR032675 -
Lele02g0625 644 FunFam EIN3-binding F-box protein 1 255 444 - -
Lele02g0625 644 Pfam Leucine Rich repeat 562 580 IPR001611 GO:0005515
Lele02g0625 644 Pfam Leucine Rich repeat 241 264 IPR001611 GO:0005515
Lele02g0625 644 PANTHER UNCHARACTERIZED 535 627 - -
Lele02g0625 644 Gene3D Ribonuclease Inhibitor 453 643 IPR032675 -
Lele02g0625 644 SUPERFAMILY F-box domain 61 103 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0625 Lele-ChrLele02 3740650 3743114 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0623 28 3971757 3975195 Lele02g0625 02 3740650 3743114 CCT
Lele25g0627 25 3954023 3956611 Lele02g0625 02 3740650 3743114 CCT
Lele26g0638 26 4051357 4053895 Lele02g0625 02 3740650 3743114 CCT
Lele02g0625 02 3740650 3743114 Lele02g0625 02 3740650 3743114 ECH
Lele02g0625 02 3740650 3743114 Lele04g0644 04 3880299 3882750 hybridization