Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0622 ATGTCAAAAGTCCTCGGATTTACCGGAATTGATGGATTTTTCCCCGGGGGGTCAATATATGCTAACCCCAAGGAGCCCAGTCTCTTGTTGTCTCTTGGCCGTCATGTTGATGTATACTTTCCACCTCAGAAGAGATCACGTATCGGTGCTCCATTGAAGAGATCACCCATCAATGATCCATTTCTTCTCAGTGGAGAATGGTTTGAGGCTGAGAAGAAGAAGCCACAAACATCCATTGAAGATTTGCCAGATGAATGCCTCTTTGAGATCTTCAGAAGGTTGCCTGGAGGTCAAGAGAGGAGCTCATGTGCCTGTGTTTCCAAGCGCTGGCTTTGGCTCCAAAGTAATATTTGCAAGGATGAAATTTGCAGTAACGAGAAGACAAGTTATGAGAATGATGTTATTGGAGAGGAGAATGATGTTGAGGAATTTGGGGGTGGTGGATGCCTCTCCCGAGACTTGGAAGGAAAGAAGGCGACTGATGTTAGACTTGCTGCTATTGCTGTTGGGACTGCTTCTCGTGGTGGATTGGGAAAGCTTTCAATCCGTGGAGGTAATACTGGTTGTGCAGTGACTAATCTTGGTCTCAGAGCAGTTTCCCATGGATGCCCTTCTTTAAAGGCTCTTTCTCTTTGGAATGTTACTATGATAGATGATGAAGGCCTGATTGAGATTGCTAGTGGATGTCCCCAGTTAAAGAAGCTTGATCTTTGCCATTGTCCCACAATATCTGACAAGGCTTTGATTGCAGTTGCAAAGAACTGCCCTAACCTGACCGAGTTATCAATTGAATCATGTCCCAGAATTGGTAATGAAGGTCTACAAGCTATTGGGCAGTTTAGCACTGGCCTAAAGTCTTTGTCAATCAAAAATTGCACTTGTGTTGGCGATCAGGGAATTGCGAGCCTTTTTTCTTCAAATTCTTTTCTTCTGACAAAGGTGAAGCTTGAGGCACTGACAATTTCTGACCTCTCTTTAGCTGTTATTGGACATTATGGTAAGGCAGTTACAGATCTTGCCCTTCAATGCCTCCCTAATGTTAGTGAGAAAGGGTTCTGGCTCATGGGTAACAGTCACGGGTTGCAGAAGTTAAATTCACTCTCAATTGCATCCTGTCAAGGAATAACAGATATTGGGCTTGATGCTTTAGGAAAGGGTTGCCCAAATCTCAAGCACCTGTATATCTGTAAAAGTGCATTCCTATCAGACTACGGGCTGGCCTCGTTTTCCAAAGCTGCTTTATCAATTGAGAGCCTAAAATTGGAGGAGTGCCACAGAATCACCCAGCTTGGGTTTGTTGGTGTCCTTTTCATATGTTGTGCCAAATTGAAGGCCCTTGCGCTTATAAGCTGCTCCGGGATTAAGGATCAGAATTTGGTGTTGCCTTCTGTATTTCCTTGCCAATCACTGCAGTCTCTATCAATTATTAACTGTCCCGGATTTGGTGATGCTACCATGGCTTTATTGGGAAAGCTTTGCCCTCAGCTGCAGTATGTTGAATTGAGCAGACTTGAGGGAGTGACTGATGCGGGGTTCCTCCCATTGCTTTTGAATTCTGAGGCTGGTCTGGTTAAAGTTAATCTCAGCCACTGCATAAATTTGACAGATAAAGTTGTTTCCTCCATCGCAAATAAGCATGGCCTGACACTCGAGGTCTTAAATCTTGATGGTTGTAAAAAGATCACCGATACTAGCTTGATGGCAATTGCTGAAAACTGTCCATTGATCTGGGATCTGGATGTGTCTGAGTCTGCAATTACTGATGCCGGTGTCACAGCCCTGGCAGGTGGTGGCATGTTCCATTTGCAGATCCTGTCTTTGTCAGGTTGCTCTCTTGTTTCAAACAAGAGCCTGTCTGCTTTGCGAAATATGGGTGAGACCCTTCTGGGATTAAATATCCGTAACTGCAAGGCAATTAACAGTCGTACTATTGGGAAGCTCGTGGAACAGCTCTGGAGTTCGTTGTTTATGATACTGTTGTCTTCAAGGGCTATGGCCATGGCAGCTAGTTATTCGGCTCTGCCATCACAACCTGTCGGTTATCCTTGCGTCAAAGCGAAGTCATTGGATGAGGTAATGAGTGGGGTCGATTCTAGTGATGGCTCCGTACTGAATTTGGTCTCTACAAGTCAGCAGTTGCTACCAATTCTTATCATAAGCTGGGATGAACGCATTTCATTTCTTAAGCATGAAGCTTGTAGACCTACCGACTCTGACAACTGA 2223 0.4467 MSKVLGFTGIDGFFPGGSIYANPKEPSLLLSLGRHVDVYFPPQKRSRIGAPLKRSPINDPFLLSGEWFEAEKKKPQTSIEDLPDECLFEIFRRLPGGQERSSCACVSKRWLWLQSNICKDEICSNEKTSYENDVIGEENDVEEFGGGGCLSRDLEGKKATDVRLAAIAVGTASRGGLGKLSIRGGNTGCAVTNLGLRAVSHGCPSLKALSLWNVTMIDDEGLIEIASGCPQLKKLDLCHCPTISDKALIAVAKNCPNLTELSIESCPRIGNEGLQAIGQFSTGLKSLSIKNCTCVGDQGIASLFSSNSFLLTKVKLEALTISDLSLAVIGHYGKAVTDLALQCLPNVSEKGFWLMGNSHGLQKLNSLSIASCQGITDIGLDALGKGCPNLKHLYICKSAFLSDYGLASFSKAALSIESLKLEECHRITQLGFVGVLFICCAKLKALALISCSGIKDQNLVLPSVFPCQSLQSLSIINCPGFGDATMALLGKLCPQLQYVELSRLEGVTDAGFLPLLLNSEAGLVKVNLSHCINLTDKVVSSIANKHGLTLEVLNLDGCKKITDTSLMAIAENCPLIWDLDVSESAITDAGVTALAGGGMFHLQILSLSGCSLVSNKSLSALRNMGETLLGLNIRNCKAINSRTIGKLVEQLWSSLFMILLSSRAMAMAASYSALPSQPVGYPCVKAKSLDEVMSGVDSSDGSVLNLVSTSQQLLPILIISWDERISFLKHEACRPTDSDN 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0622 740 FunFam EIN3-binding F-box protein 1 268 458 - -
Lele28g0622 740 FunFam EIN3-binding F-box protein 1 78 115 - -
Lele28g0622 740 SUPERFAMILY RNI-like 355 615 - -
Lele28g0622 740 SUPERFAMILY RNI-like 189 431 - -
Lele28g0622 740 Pfam Leucine Rich repeat 549 570 IPR001611 GO:0005515
Lele28g0622 740 Pfam Leucine Rich repeat 362 383 IPR001611 GO:0005515
Lele28g0622 740 Pfam Leucine Rich repeat 254 277 IPR001611 GO:0005515
Lele28g0622 740 FunFam EIN3-binding F-box protein 1 519 655 - -
Lele28g0622 740 Gene3D Ribonuclease Inhibitor 269 461 IPR032675 -
Lele28g0622 740 Gene3D Ribonuclease Inhibitor 153 268 IPR032675 -
Lele28g0622 740 Gene3D Ribonuclease Inhibitor 462 518 IPR032675 -
Lele28g0622 740 Gene3D Ribonuclease Inhibitor 519 575 IPR032675 -
Lele28g0622 740 Gene3D Ribonuclease Inhibitor 576 666 IPR032675 -
Lele28g0622 740 PANTHER UNCHARACTERIZED 362 536 - -
Lele28g0622 740 FunFam EIN3-binding F-box protein 1 149 267 - -
Lele28g0622 740 Pfam F-box-like 79 110 IPR001810 GO:0005515
Lele28g0622 740 SMART LRR_CC_2 520 545 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 387 412 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 203 228 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 255 280 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 493 518 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 599 624 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 281 306 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 229 254 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 547 572 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 440 465 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 573 597 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 467 492 IPR006553 -
Lele28g0622 740 SMART LRR_CC_2 361 386 IPR006553 -
Lele28g0622 740 Gene3D - 71 123 - -
Lele28g0622 740 SUPERFAMILY F-box domain 74 113 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0622 Lele-ChrLele28 3966456 3970542 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0649 01 3794181 3794765 Lele28g0622 28 3966456 3970542 CCT
Lele02g0635 02 3798330 3798911 Lele28g0622 28 3966456 3970542 CCT
Lele03g0648 03 3801987 3805025 Lele28g0622 28 3966456 3970542 CCT
Lele04g0655 04 3944359 3944946 Lele28g0622 28 3966456 3970542 CCT
Lele25g0627 25 3954023 3956611 Lele28g0622 28 3966456 3970542 hybridization
Lele26g0638 26 4051357 4053895 Lele28g0622 28 3966456 3970542 hybridization