Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0642 Acco11g0058 . Accr9g02143 . Adu03g04410 . . . . Aev03g2378 . Ahy13g4354 . Aip03g04831 Alju09g0079 . . Amo13g5426 . Apr2g1788 Arst3g05832 . . . . . Bva01g01325 Bva11g00461 Car06g00022 . . Cca01g00460 . . . Dod04g1903 Enph13g0705 . . . . . Gma08g00860 . . . . . . . . . . . . . . . . . Lapu3g02673 . Lasa7g03808 . . . . . . . . . . . . Mal7g4031 Mepo2g03725 . Mesa13g01445 . Mibi12g0060 . . Mtr8g2661 Phac2g02873 . Phco4g02149 . Prci10g2986 . . Psa7g1967 Pste3g02459 . Pte14g00527 . . . Pumo6g01397 . Pvu2g1906 . Rops2g01499 . Seca12g05503 . Spst3g01931 . . . Sto11g0253 . . Tpr3g1427 Trre7g04349 . . Tsu02g01358 Vian1g02792 . Vifa6g01912 . Vimu11g01663 . Viun3g02088 . Vivi5g04674 . . .
Vvi1g0643 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00456 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0644 . . . . . . . Aed7g2218 . Aev03g0699 . Ahy13g3552 . Aip03g04000 . . . Amo13g4516 . Apr2g1793 . . . Bach3g01063 . . Bva01g01322 Bva11g00455 . . . Cca01g00456 . . . Dod04g0188 . . . . . . Gma08g00857 Gma18g00411 . . . . . . . . . . . . . . . . . . . Lasa2g01499 . . . . . . . . . . . . . Mepo7g02059 . Mesa17g03410 . . . . . . Phco4g02153 Phco3g00540 . . . . Pste3g02452 . Pte14g00526 . . Pte8g00598 Pumo6g01403 Pumo9g02508 Pvu2g1910 Pvu8g2480 Rops5g00453 Rops9g01054 Seca12g05499 Seca6g02389 Spst3g01940 . . . . . . . . . . . Vian1g02800 Vian7g01726 . Vifa1g01713 Vimu11g01651 Vimu1g00251 Viun3g02076 Viun8g02093 . . . .
Vvi1g0645 . . . . . . . Aed7g2217 . . . . . . . . . . . . . . . . . . . Bva11g00454 Car06g00021 . . Cca01g00455 . . . . . . . . . . Gma08g00856 . . . . . . . . . . . . . . . . . . Lapu6g02196 . . . . . . . . . . . . . Mal7g4024 . . . . . . . Mtr8g2652 . . Phco4g02154 . . . . . Pste3g02451 Pste8g01530 . . . Pte8g00597 Pumo6g01405 . Pvu2g1911 Pvu8g2481 Rops2g01508 . . . Spst3g01939 . . . . . . Tpr3g1434 . . . Tsu02g01372 Vian1g02803 . Vifa6g01921 . Vimu11g01649 Vimu1g01159 Viun3g02072 . . . . .
Vvi1g0646 . . . . . . . . . Aev03g2375 . Ahy13g4351 . Aip03g04827 . . . Amo13g5423 . . . . . . . . Bva01g01317 Bva11g00451 Car06g01208 . . . . . . Dod04g1900 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g4023 . . . . . . . Mtr8g2651 . . . . . . . Psa7g1971 . . . . . . . . . . . . . . . . . . . . . Tpr3g1435 . . . . . . . . . . . . . . . .
Vvi1g0647 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01316 Bva11g00449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0649 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0650 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 65 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0641 Chr1 6411341 6412579 +
Vvi Vvi1g0642 Chr1 6417129 6418605 -
Acco Acco11g0058 Chr11 831397 833111 -
Accr Accr9g02143 Chr9 46122421 46124139 +
Adu Adu03g04410 Chr03 133074722 133076187 +
Aev Aev03g2378 Chr03 25159309 25161324 +
Ahy Ahy13g4354 Chr13 143202070 143203649 +
Aip Aip03g04831 Chr03 132563054 132564496 +
Alju Alju09g0079 Chr09 928819 930564 -
Amo Amo13g5426 Chr13 155142778 155144181 +
Apr Apr2g1788 Chr2 23545265 23546853 -
Arst Arst3g05832 Chr3 131838468 131839957 +
Bva Bva01g01325 Chr01 14431515 14433140 +
Bva Bva11g00461 Chr11 8299186 8300774 +
Car Car06g00022 Chr06 268539 270415 +
Cca Cca01g00460 Chr01 5720238 5721900 +
Dod Dod04g1903 Chr04 42066044 42067978 +
Enph Enph13g0705 Chr13 13295916 13296371 +
Gma Gma08g00860 Chr08 7046232 7048177 +
Lapu Lapu3g02673 Chr3 49380355 49381942 -
Lasa Lasa7g03808 Chr7 615839595 615841050 +
Mal Mal7g4031 Chr7 106658760 106660335 +
Mepo Mepo2g03725 Chr2 46526113 46527923 +
Mesa Mesa13g01445 Chr13 17327325 17328689 -
Mibi Mibi12g0060 Chr12 1163350 1164950 -
Mtr Mtr8g2661 Chr8 37231449 37233606 +
Phac Phac2g02873 Chr2 30502656 30505007 -
Phco Phco4g02149 Chr4 42161969 42163528 -
Prci Prci10g2986 Chr10 38373592 38375521 +
Psa Psa7g1967 Chr7 144332915 144335195 -
Pste Pste3g02459 Chr3 17410351 17412229 +
Pte Pte14g00527 Chr14 25105098 25106861 +
Pumo Pumo6g01397 Chr6 18834848 18836773 -
Pvu Pvu2g1906 Chr2 34034532 34036440 -
Rops Rops2g01499 Chr2 22206721 22208205 -
Seca Seca12g05503 Chr12 145962307 145964408 +
Spst Spst3g01931 Chr3 44959936 44961521 -
Sto Sto11g0253 Chr11 3317711 3320019 +
Tpr Tpr3g1427 Chr3 12693616 12695850 -
Trre Trre7g04349 Chr7 51368134 51369861 +
Tsu Tsu02g01358 Chr02 11836837 11838927 -
Vian Vian1g02792 Chr1 43609589 43610968 -
Vifa Vifa6g01912 Chr6 713285092 713286618 -
Vimu Vimu11g01663 Chr11 20695258 20696840 +
Viun Viun3g02088 Chr3 16898988 16900944 +
Vivi Vivi5g04674 Chr5 145500700 145502581 -
Vvi Vvi1g0643 Chr1 6421050 6421682 -
Bva Bva11g00456 Chr11 8264813 8265166 +
Vvi Vvi1g0644 Chr1 6433480 6435929 -
Aed Aed7g2218 Chr7 24706813 24707301 -
Aev Aev03g0699 Chr03 5252559 5263946 +
Ahy Ahy13g3552 Chr13 133750015 133754798 -
Aip Aip03g04000 Chr03 123340897 123345489 -
Amo Amo13g4516 Chr13 141828166 141832962 -
Apr Apr2g1793 Chr2 23579710 23582734 +
Bach Bach3g01063 Chr3 21029561 21033489 +
Bva Bva01g01322 Chr01 14401172 14404747 +
Bva Bva11g00455 Chr11 8244126 8247267 +
Cca Cca01g00456 Chr01 5677853 5689151 +
Dod Dod04g0188 Chr04 2294233 2302774 +
Gma Gma08g00857 Chr08 7017444 7020082 -
Gma Gma18g00411 Chr18 3748756 3759371 -
Lasa Lasa2g01499 Chr2 461685826 461689379 -
Mepo Mepo7g02059 Chr7 30905194 30911630 +
Mesa Mesa17g03410 Chr17 60111546 60118237 +
Phco Phco4g02153 Chr4 42215465 42219020 +
Phco Phco3g00540 Chr3 4206923 4212873 +
Pste Pste3g02452 Chr3 17328805 17329663 -
Pte Pte14g00526 Chr14 25086754 25091305 -
Pte Pte8g00598 Chr8 28493235 28493708 +
Pumo Pumo6g01403 Chr6 18994999 18997556 +
Pumo Pumo9g02508 Chr9 59777460 59784073 -
Pvu Pvu2g1910 Chr2 34088818 34090976 +
Pvu Pvu8g2480 Chr8 55396605 55399774 -
Rops Rops5g00453 Chr5 7748009 7755031 -
Rops Rops9g01054 Chr9 17299913 17306386 -
Seca Seca12g05499 Chr12 145889330 145892710 -
Seca Seca6g02389 Chr6 86210470 86219779 -
Spst Spst3g01940 Chr3 45874061 45874513 +
Vian Vian1g02800 Chr1 43738045 43741530 +
Vian Vian7g01726 Chr7 27040102 27041998 -
Vifa Vifa1g01713 Chr1 280506680 280510649 -
Vimu Vimu11g01651 Chr11 20551421 20551825 -
Vimu Vimu1g00251 Chr1 1452177 1453406 +
Viun Viun3g02076 Chr3 16760381 16762597 -
Viun Viun8g02093 Chr8 31356459 31361674 +
Vvi Vvi1g0645 Chr1 6440902 6443147 -
Aed Aed7g2217 Chr7 24702835 24704546 -
Bva Bva11g00454 Chr11 8234688 8237944 +
Car Car06g00021 Chr06 255212 263248 +
Cca Cca01g00455 Chr01 5670181 5671074 +
Gma Gma08g00856 Chr08 7009477 7011575 -
Lapu Lapu6g02196 Chr6 21472305 21479780 -
Mal Mal7g4024 Chr7 106611906 106614603 -
Mtr Mtr8g2652 Chr8 37170806 37173496 -
Phco Phco4g02154 Chr4 42223494 42226874 +
Pste Pste3g02451 Chr3 17327102 17328690 -
Pste Pste8g01530 Chr8 8568990 8575798 -
Pte Pte8g00597 Chr8 28489182 28493133 +
Pumo Pumo6g01405 Chr6 19011946 19014002 -
Pvu Pvu2g1911 Chr2 34102038 34104035 +
Pvu Pvu8g2481 Chr8 55401021 55401510 -
Rops Rops2g01508 Chr2 22284113 22286633 +
Spst Spst3g01939 Chr3 45872306 45873936 +
Tpr Tpr3g1434 Chr3 12741807 12745049 +
Tsu Tsu02g01372 Chr02 11917367 11919667 +
Vian Vian1g02803 Chr1 43774743 43776810 +
Vifa Vifa6g01921 Chr6 715982595 715984521 +
Vimu Vimu11g01649 Chr11 20541251 20541655 -
Vimu Vimu1g01159 Chr1 8908160 8913842 -
Viun Viun3g02072 Chr3 16733164 16735270 -
Vvi Vvi1g0646 Chr1 6449728 6457279 +
Aev Aev03g2375 Chr03 25150128 25152508 +
Ahy Ahy13g4351 Chr13 143187932 143191441 +
Aip Aip03g04827 Chr03 132537844 132545703 +
Amo Amo13g5423 Chr13 155117235 155131546 +
Bva Bva01g01317 Chr01 14280407 14286569 -
Bva Bva11g00451 Chr11 8199772 8211383 -
Car Car06g01208 Chr06 11890671 11900106 -
Dod Dod04g1900 Chr04 42053449 42056689 +
Mal Mal7g4023 Chr7 106608418 106611241 +
Mtr Mtr8g2651 Chr8 37165109 37168563 +
Psa Psa7g1971 Chr7 144383645 144387160 +
Tpr Tpr3g1435 Chr3 12745166 12748600 -
Vvi Vvi1g0647 Chr1 6459231 6466438 +
Bva Bva01g01316 Chr01 14275123 14279277 +
Bva Bva11g00449 Chr11 8191070 8194886 +
Vvi Vvi1g0648 Chr1 6467603 6468781 -
Vvi Vvi1g0649 Chr1 6469513 6470724 -
Vvi Vvi1g0650 Chr1 6499124 6503087 -
Lapu Lapu6g02196 Chr6 21472305 21479780 -
Lapu Lapu6g02196 Chr6 21472305 21479780 -
Pste Pste8g01530 Chr8 8568990 8575798 -
Pte Pte8g00597 Chr8 28489182 28493133 +
Pte Pte8g00597 Chr8 28489182 28493133 +
Pvu Pvu8g2481 Chr8 55401021 55401510 -
Vimu Vimu1g01159 Chr1 8908160 8913842 -
Vimu Vimu1g00251 Chr1 1452177 1453406 +