Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0635 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0637 . . . . Adu03g04413 . . Aed5g1884 . Aev03g2381 . Ahy13g4357 . Aip03g04835 . . . Amo13g5431 . Apr2g1785 Arst3g05835 . . Bach3g01066 . . Bva01g01336 Bva11g00463 Car06g01202 . . Cca09g02021 . . . Dod04g1908 . . . . . . Gma08g01164 . . . . . . . . . . . . . . . . . Lapu3g02670 . Lasa7g03814 Lasa2g01494 . . . . . . . . . Lja4g1163 . Mal7g4042 Mepo2g03729 Mepo7g02063 Mesa13g01438 Mesa17g03414 . . . Mtr8g2666 Phac2g02869 Phac2g02869 Phco4g02145 Phco3g00544 . . . . Pste3g02480 Pste8g01526 Pte14g00532 . . . Pumo6g01389 Pumo9g02502 Pvu2g1901 Pvu8g2476 Rops2g01496 Rops9g01042 Seca12g05517 Seca8g01209 Spst3g01918 . . Ssu5g2586 Sto11g0256 . . Tpr3g1424 Trre7g04355 . . Tsu02g01354 Vian1g02786 Vian7g01721 Vifa6g01905 Vifa1g01701 Vimu11g01674 Vimu1g01153 Viun3g02096 Viun8g02098 Vivi5g04664 . . Vra7g2141
Vvi1g0638 Acco11g0054 . Accr9g02148 . . . . Aed5g1510 . Aev03g2380 . Ahy13g4356 . Aip03g04834 Alju09g0072 . . Amo13g5430 . Apr2g1786 . . . . . . Bva01g01335 . Car06g01203 . . Cca09g01666 . . . Dod04g1907 . . . . . . Gma08g00862 . . . . . . . . . . . . . . . . . Lapu3g02671 . Lasa7g03812 . Lele49g1637 Lele50g1740 Lele51g1640 Lele52g1702 . . . . . . . Mal7g4041 . . Mesa13g01440 . Mibi12g0054 . . Mtr8g2665 . . Phco4g02146 . . . . Psa7g1957 . . . . . . . . Pvu2g1904 . . . . . . . . Ssu5g2182 . . . . . . . . . . . . Vimu11g01669 . . . Vivi5g04668 . . Vra7g0988
Vvi1g0639 . . Accr9g02145 . Adu03g04411 . . Aed5g1509 . Aev03g2379 . Ahy13g4355 . Aip03g04833 Alju09g0076 . . Amo13g5429 . Apr2g1787 Arst3g05833 . . . . . . Bva11g00462 Car06g01204 . . Cca09g01665 Dere09g2287 . . Dod04g1906 Enph13g0707 . . . . . Gma08g00861 . . . . . . . . . . . . . . . . . Lapu3g02672 . Lasa7g03811 . . . . . . . . . . . . Mal7g4035 Mepo2g03727 . Mesa13g01441 . Mibi12g0057 . . Mtr8g2662 . . Phco4g02147 . Prci10g2995 . . Psa7g1903 Pste3g02472 . Pte14g00528 Pte12g00807 . . Pumo6g01394 . Pvu2g1905 . Rops2g01498 . . . Spst3g00189 . . Ssu5g2181 . . . Tpr3g1426 Trre7g04352 . . Tsu02g01357 Vian1g02790 . Vifa6g01907 . Vimu11g01668 . Viun3g02091 . Vivi5g04671 . . Vra7g0991
Vvi1g0640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0631 Chr1 6282856 6285766 -
Vvi Vvi1g0632 Chr1 6286381 6287151 -
Vvi Vvi1g0633 Chr1 6289289 6290657 +
Vvi Vvi1g0634 Chr1 6298919 6300096 +
Vvi Vvi1g0635 Chr1 6306239 6306824 +
Bva Bva11g00465 Chr11 8333507 8335983 +
Vvi Vvi1g0636 Chr1 6307292 6307845 +
Vvi Vvi1g0637 Chr1 6319642 6324996 +
Adu Adu03g04413 Chr03 133129072 133132917 +
Aed Aed5g1884 Chr5 22069853 22076221 -
Aev Aev03g2381 Chr03 25185890 25189802 +
Ahy Ahy13g4357 Chr13 143261073 143265048 +
Aip Aip03g04835 Chr03 132624028 132627931 +
Amo Amo13g5431 Chr13 155210751 155214676 +
Apr Apr2g1785 Chr2 23496510 23501850 -
Arst Arst3g05835 Chr3 131892749 131896530 +
Bach Bach3g01066 Chr3 21043415 21047024 +
Bva Bva01g01336 Chr01 14510779 14516025 +
Bva Bva11g00463 Chr11 8322378 8327056 +
Car Car06g01202 Chr06 11822720 11827974 -
Cca Cca09g02021 Chr09 45290381 45299950 -
Dod Dod04g1908 Chr04 42129750 42134384 +
Gma Gma08g01164 Chr08 9910221 9917336 -
Lapu Lapu3g02670 Chr3 49295941 49304016 -
Lasa Lasa7g03814 Chr7 616478668 616483844 +
Lasa Lasa2g01494 Chr2 461540429 461543809 -
Lja Lja4g1163 Chr4 10333151 10339275 -
Mal Mal7g4042 Chr7 106872621 106878456 +
Mepo Mepo2g03729 Chr2 46609917 46615963 +
Mepo Mepo7g02063 Chr7 30936578 30941364 +
Mesa Mesa13g01438 Chr13 17182292 17187966 -
Mesa Mesa17g03414 Chr17 60149889 60154238 +
Mtr Mtr8g2666 Chr8 37310443 37315996 +
Phac Phac2g02869 Chr2 30336521 30346985 -
Phac Phac2g02869 Chr2 30336521 30346985 -
Phco Phco4g02145 Chr4 42011173 42021041 -
Phco Phco3g00544 Chr3 4243999 4247359 +
Pste Pste3g02480 Chr3 17571580 17578554 +
Pste Pste8g01526 Chr8 8522623 8526080 -
Pte Pte14g00532 Chr14 25230466 25232949 -
Pumo Pumo6g01389 Chr6 18705314 18711530 -
Pumo Pumo9g02502 Chr9 59703309 59707265 -
Pvu Pvu2g1901 Chr2 33861991 33872396 -
Pvu Pvu8g2476 Chr8 55364696 55368831 -
Rops Rops2g01496 Chr2 22056180 22061598 -
Rops Rops9g01042 Chr9 17081304 17084776 -
Seca Seca12g05517 Chr12 146222380 146229521 +
Seca Seca8g01209 Chr8 18701914 18706103 -
Spst Spst3g01918 Chr3 44104618 44112016 -
Ssu Ssu5g2586 Chr5 70385970 70398088 -
Sto Sto11g0256 Chr11 3337202 3341133 +
Tpr Tpr3g1424 Chr3 12642119 12647698 -
Trre Trre7g04355 Chr7 51428477 51433501 +
Tsu Tsu02g01354 Chr02 11760727 11766501 -
Vian Vian1g02786 Chr1 43361209 43367536 -
Vian Vian7g01721 Chr7 26996599 26999759 -
Vifa Vifa6g01905 Chr6 711000750 711010886 -
Vifa Vifa1g01701 Chr1 278940002 278943342 -
Vimu Vimu11g01674 Chr11 21191095 21196451 +
Vimu Vimu1g01153 Chr1 8866505 8869639 -
Viun Viun3g02096 Chr3 17100703 17106877 +
Viun Viun8g02098 Chr8 31392765 31396532 +
Vivi Vivi5g04664 Chr5 145321384 145327158 -
Vra Vra7g2141 Chr7 41115320 41121159 +
Vvi Vvi1g0638 Chr1 6337833 6391283 +
Acco Acco11g0054 Chr11 794165 799416 +
Accr Accr9g02148 Chr9 46241318 46259575 +
Aed Aed5g1510 Chr5 19428744 19439457 +
Aev Aev03g2380 Chr03 25177794 25185139 +
Ahy Ahy13g4356 Chr13 143253325 143260696 +
Aip Aip03g04834 Chr03 132616057 132623609 +
Alju Alju09g0072 Chr09 839467 859124 -
Amo Amo13g5430 Chr13 155203002 155210341 +
Apr Apr2g1786 Chr2 23503316 23519910 -
Bva Bva01g01335 Chr01 14492238 14509142 +
Car Car06g01203 Chr06 11834329 11853385 -
Cca Cca09g01666 Chr09 40604723 40625020 +
Dod Dod04g1907 Chr04 42109869 42128220 +
Gma Gma08g00862 Chr08 7083721 7096679 +
Lapu Lapu3g02671 Chr3 49309822 49333168 -
Lasa Lasa7g03812 Chr7 616283269 616291098 +
Lele Lele49g1637 Chr49 18416711 18433932 -
Lele Lele50g1740 Chr50 22136036 22149986 +
Lele Lele51g1640 Chr51 17376016 17410131 -
Lele Lele52g1702 Chr52 20561582 20575579 +
Mal Mal7g4041 Chr7 106867906 106868617 +
Mesa Mesa13g01440 Chr13 17227095 17243436 -
Mibi Mibi12g0054 Chr12 1103515 1110449 -
Mtr Mtr8g2665 Chr8 37294037 37307845 +
Phco Phco4g02146 Chr4 42030803 42068197 -
Psa Psa7g1957 Chr7 143410244 143418283 +
Pvu Pvu2g1904 Chr2 33902335 33922399 -
Ssu Ssu5g2182 Chr5 62705026 62739072 +
Vimu Vimu11g01669 Chr11 21092693 21094499 +
Vivi Vivi5g04668 Chr5 145380758 145390030 -
Vra Vra7g0988 Chr7 23901891 23940381 -
Vvi Vvi1g0639 Chr1 6392081 6395576 -
Accr Accr9g02145 Chr9 46180775 46185636 +
Adu Adu03g04411 Chr03 133117818 133121183 +
Aed Aed5g1509 Chr5 19419918 19424866 +
Aev Aev03g2379 Chr03 25173155 25176350 +
Ahy Ahy13g4355 Chr13 143249443 143253073 +
Aip Aip03g04833 Chr03 132612524 132615875 +
Alju Alju09g0076 Chr09 899635 906177 -
Amo Amo13g5429 Chr13 155199349 155202693 +
Apr Apr2g1787 Chr2 23522000 23525843 -
Arst Arst3g05833 Chr3 131881181 131884867 +
Bva Bva11g00462 Chr11 8314832 8320186 +
Car Car06g01204 Chr06 11862054 11866271 -
Cca Cca09g01665 Chr09 40593260 40597969 +
Dere Dere09g2287 Chr09 34112972 34117574 -
Dod Dod04g1906 Chr04 42099906 42104850 +
Enph Enph13g0707 Chr13 13312426 13317687 +
Gma Gma08g00861 Chr08 7076836 7082253 +
Lapu Lapu3g02672 Chr3 49339902 49344922 -
Lasa Lasa7g03811 Chr7 616178780 616183299 +
Mal Mal7g4035 Chr7 106788938 106793042 +
Mepo Mepo2g03727 Chr2 46556326 46560431 +
Mesa Mesa13g01441 Chr13 17249795 17253727 -
Mibi Mibi12g0057 Chr12 1133786 1138053 -
Mtr Mtr8g2662 Chr8 37252188 37256726 +
Phco Phco4g02147 Chr4 42087404 42092103 -
Prci Prci10g2995 Chr10 38471041 38475700 +
Psa Psa7g1903 Chr7 139231588 139236879 -
Pste Pste3g02472 Chr3 17531753 17536399 +
Pte Pte14g00528 Chr14 25125925 25131447 +
Pte Pte12g00807 Chr12 9231971 9236182 +
Pumo Pumo6g01394 Chr6 18745350 18750923 -
Pvu Pvu2g1905 Chr2 33941278 33946277 -
Rops Rops2g01498 Chr2 22117679 22121930 -
Spst Spst3g00189 Chr3 3398684 3401024 -
Ssu Ssu5g2181 Chr5 62687191 62692019 +
Tpr Tpr3g1426 Chr3 12662474 12673119 -
Trre Trre7g04352 Chr7 51401719 51405854 +
Tsu Tsu02g01357 Chr02 11795239 11800961 -
Vian Vian1g02790 Chr1 43458257 43462564 -
Vifa Vifa6g01907 Chr6 712434797 712439778 -
Vimu Vimu11g01668 Chr11 20987315 20991893 +
Viun Viun3g02091 Chr3 17017423 17021090 +
Vivi Vivi5g04671 Chr5 145437823 145443395 -
Vra Vra7g0991 Chr7 23963739 23968559 -
Vvi Vvi1g0640 Chr1 6403883 6404170 -