Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0651 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g0248 . . . . . . . Mtr1g4294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g2471 Tpr1g0214 . . . Tsu01g04972 . . . . . . . . . . . . .
Vvi1g0652 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0653 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00401 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0655 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01292 Bva11g00397 Car04g02752 . . . . . . . . . . . . . . . . . . . Lal6g1129 . . . . . Lan11g1151 . . . . . . . . . . . . . . . . . . . Mal1g0249 . . Mepo4g01285 . Mesa1g01422 . . Mtr1g4293 . . . . Phco8g03337 . . . . . Pste1g03734 . . . . . Pumo8g00131 . Pvu3g0087 . Rops1g00316 . Seca10g05280 . Spst2g02180 . . . . Tpr1g0215 . . Trre1g01362 Tsu01g04971 . . Vian10g01844 . Vifa3g03815 . Vimu7g00416 . Viun2g00044 . . . .
Vvi1g0656 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01291 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g0250 . . . . . . . Mtr1g4292 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu01g04970 . . . . . . . . . . . . .
Vvi1g0657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car06g00869 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0658 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0660 . . . . . . Aed6g0225 . . . . . . . . . . . Apr7g1708 . . . . . . . . Bva11g01239 . . Cca06g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1890 . Sto11g1226 . . . . . . . . . . . . . . . . . Vra11g1118 .
   
Previous Page 66 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0651 Chr1 6571925 6572227 +
Bva Bva01g01293 Chr01 14004885 14005169 -
Mal Mal1g0248 Chr1 2682137 2682445 +
Mtr Mtr1g4294 Chr1 54626727 54629704 -
Sto Sto6g2471 Chr6 31580113 31580415 -
Tpr Tpr1g0214 Chr1 1742355 1746118 +
Tsu Tsu01g04972 Chr01 56566454 56569699 -
Vvi Vvi1g0652 Chr1 6572596 6583329 +
Vvi Vvi1g0653 Chr1 6584591 6585655 +
Bva Bva11g00401 Chr11 7755114 7759052 +
Vvi Vvi1g0654 Chr1 6586758 6588012 +
Vvi Vvi1g0655 Chr1 6602502 6605760 +
Bva Bva01g01292 Chr01 13975830 13980930 -
Bva Bva11g00397 Chr11 7719030 7723124 -
Car Car04g02752 Chr04 53426018 53431825 +
Lal Lal6g1129 Chr6 8443532 8446957 -
Lan Lan11g1151 Chr11 16033072 16036381 +
Mal Mal1g0249 Chr1 2716661 2719959 +
Mepo Mepo4g01285 Chr4 16506492 16510642 -
Mesa Mesa1g01422 Chr1 19569596 19578504 -
Mtr Mtr1g4293 Chr1 54580486 54584013 -
Phco Phco8g03337 Chr8 47959687 47964402 -
Pste Pste1g03734 Chr1 18218883 18223322 -
Pumo Pumo8g00131 Chr8 3035348 3040109 +
Pvu Pvu3g0087 Chr3 827236 832438 +
Rops Rops1g00316 Chr1 8364756 8368632 -
Seca Seca10g05280 Chr10 120720819 120725044 +
Spst Spst2g02180 Chr2 20815902 20819687 -
Tpr Tpr1g0215 Chr1 1761754 1765688 +
Trre Trre1g01362 Chr1 10248346 10252647 -
Tsu Tsu01g04971 Chr01 56546032 56549843 -
Vian Vian10g01844 Chr10 30229448 30233875 -
Vifa Vifa3g03815 Chr3 1119762997 1119764636 +
Vimu Vimu7g00416 Chr7 4520422 4524788 -
Viun Viun2g00044 Chr2 1041427 1046534 -
Vvi Vvi1g0656 Chr1 6612991 6618298 -
Bva Bva01g01291 Chr01 13965965 13971357 +
Mal Mal1g0250 Chr1 2721822 2724498 -
Mtr Mtr1g4292 Chr1 54575714 54579604 +
Tsu Tsu01g04970 Chr01 56541234 56545064 +
Vvi Vvi1g0657 Chr1 6622461 6624298 +
Car Car06g00869 Chr06 8477264 8479684 +
Vvi Vvi1g0658 Chr1 6625121 6628344 -
Vvi Vvi1g0659 Chr1 6628375 6633436 -
Vvi Vvi1g0660 Chr1 6633833 6634450 +
Aed Aed6g0225 Chr6 1974532 1980600 -
Apr Apr7g1708 Chr7 24324052 24329796 +
Bva Bva11g01239 Chr11 13049539 13053518 -
Cca Cca06g00906 Chr06 22588507 22592886 +
Ssu Ssu2g1890 Chr2 70659371 70664419 +
Sto Sto11g1226 Chr11 12128190 12132454 +
Vra Vra11g1118 Chr11 10802887 10808762 -