Selected Analysis Tools
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Tools |
Description |
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Sequence alignment between arbitrary species |
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Quickly search for homologous sequences |
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Leguminosae sequence alignment and best match |
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Find cds and pep sequences for gene ids |
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Leguminosae sequence alignment and Matching visualization |
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Identify homologous chromosomal regions |
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Identify homologous chromosomal regions. |
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Leguminosae syntenic visualization |
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Identify the replication patterns of different genes |
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Perform statistics on block result files |
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Fast kaks batch operation |
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Perform calculations on kaks |
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KaKs calculate |
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Plotting blastp dotplot diagrams |
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Drawing block dotplot function |
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Plotting Ks dotplot diagrams |
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Subgenomic fractionation |
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Generate a collinear list |
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Subgenomic retention |
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Subgenomic loss |
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p-index determines whether homologous doubling or heterologous doubling |
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The conformation tree is based on collinear list |
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Statistics of GC content in gene |
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Chromosome length statistics |
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Gene structure information statistics |
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Chromosome hanging in rate calculation |
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Gene family circle map |
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Codon preference analysis |
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Analysis of potential regions of CpG islands |
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Motif Analysis |
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Gene structure mapping |
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Based on Hidden Markov Model |
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ldentification of gene structural domains |
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Interproscan for gene prediction of protein function |
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Multiple sequence alignment |
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Rapid construction of phylogenetic trees |
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Construct phylogenetic tree |
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Identification of transcription factor gene families |
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Heat mapping |
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Draw a lollipop diagram |
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Mapping the structure of genes |
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A tool for mapping the genosphere |
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Crawling species taxonomic information from NCBI |
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cds, pep and gff information of species were extracted |
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Multi-sequence alignment format conversion function |
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Find and replace function for sequences |
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Remove duplicate sequence |
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Extract column information |
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Multiple files are merged |
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Remove the asterisk from the protein file |
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Extract the child tree from the parent tree file |
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wgdimcs function module of WGDI |
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wgdikaks function module of WGDI |
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wgdi dotplot function module of WGDI |
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wgdikaks_dot function module of WGDI |
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wgdi_blockinfo function module of WGDI |
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wgdi_correspondence function module of WGDI |
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Tools packaging in the platform |