Bioinformatics Tools and Databases

Number	Name	Link
1	NCBI
2	TAIR
3	EMBL
4	DDBJ
5	GENSCAN
6	GenomeScan
7	softberry
8	DTU Health Tech
9	NetGene2
10	ExPaSy
11	bio.tools
12	HSLS
13	PredictProtein
14	PSlpred
15	SMART
16	Bioinformatics Toolkit
17	THREADER
18	UCL-CS Bioinformatics
19	Samtools
20	IQtree
21	Diamond
22	MEME

Genomics and Comparative Genomics

Number	Name	Link
59	KEGG
60	WEGO 2.0
61	SoyKB
62	LegumeGRN
63	Legume Information System (LIS)
64	AphidBase
65	TRUNCATULIX

Structural Biology and Protein Databases

Number	Name	Link
23	RCSB PDB
24	FSSP
25	SCOP
26	CATH
27	MODBASE
28	SWISS-MODEL
29	MODELLER
30	3D-PSSM

Genomics and Comparative Genomics

Number	Name	Link
31	NGDC
32	Active Motif
33	PlantTFDB
34	AKRUP
35	timetree
36	plant_genomes
37	evolview
38	iTOL
39	Legume Data Portal

Genomics and Comparative Genomics

Number	Name	Link
66	SFDG
67	CGKB
68	SoyFN
69	CicArVarDB
70	PlantAPAdb
71	SoyGD
72	MtSSPdb
73	MetNet Online
74	Soybean proteome database

Legume-Specific Databases and Tools

Number	Name	Link
40	iSybean
41	SoyOmics
42	CicArMiSatDB
43	SoyNet
44	LegumesSRdb
45	MtSSPdb
46	SoyBase
47	SeedStor
48	LegumeIP
49	VigSatDB
50	LegumelP V3
51	LegumeTFDB
52	Wildsoydb DataHub
53	JGI
54	iSoybean
55	SoyMD
56	PpTFDB
57	LegumelP
58	Legume Information System (LIS)

Genomics and Comparative Genomics

Number	Name	Link
75	PeanutMap
76	LIPME - INRAE/CNRS
77	PIPEMicroDB
78	PeanutDB
79	CATchUP
80	Phytozome
81	EXPath 2.0