Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1344 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1345 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1346 . . . . . . Aed1g0283 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa1g0274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1348 . . . . . . Aed1g0282 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1468 . . . . . . . . . . . . . . . . . . . . .
Vvi19g1349 Acco01g3026 . Accr1g02685 . Adu07g02109 . . . . . . . . . Alju02g1009 . . . . . Arst7g02672 . . . Bisa12g0284 . . Bva07g01442 . . . . Dere08g0142 . . . Enph3g0768 . Glsi14g0742 . Gma08g01540 . . . Gso8g1393 . . . . . . Lal20g0476 . . . . . . . . . . . . . Lele10g0431 Lele11g0471 Lele12g0845 . . . . Lja3g3950 . . . . . . . Mibi01g0898 . . . . . Phco10g00607 . Prci7g1510 . . . . . . . . . . . Pvu5g0613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1340 Chr19 22405382 22411727 +
Vvi Vvi19g1341 Chr19 22420569 22445394 +
Vvi Vvi19g1342 Chr19 22473353 22473763 -
Vvi Vvi19g1343 Chr19 22499713 22500162 -
Vvi Vvi19g1344 Chr19 22500178 22502622 -
Vvi Vvi19g1345 Chr19 22505327 22505690 +
Vvi Vvi19g1346 Chr19 22512408 22512866 +
Aed Aed1g0283 Chr1 4549605 4550129 -
Cca Cca10g01429 Chr10 21148077 21151184 -
Psa Psa1g0274 Chr1 14850737 14851424 +
Vvi Vvi19g1347 Chr19 22516711 22517184 -
Vvi Vvi19g1348 Chr19 22520035 22520493 +
Aed Aed1g0282 Chr1 4547085 4547633 -
Cca Cca10g01430 Chr10 21155829 21156600 -
Ssu Ssu8g1468 Chr8 29506986 29507552 +
Vvi Vvi19g1349 Chr19 22522303 22529858 +
Acco Acco01g3026 Chr01 47789834 47793058 -
Accr Accr1g02685 Chr1 63391699 63394936 -
Adu Adu07g02109 Chr07 70079086 70085638 +
Alju Alju02g1009 Chr02 7836708 7839757 +
Arst Arst7g02672 Chr7 68931543 68938139 +
Bisa Bisa12g0284 Chr12 3880925 3883924 -
Bva Bva07g01442 Chr07 14533984 14536781 -
Dere Dere08g0142 Chr08 2828980 2831833 -
Enph Enph3g0768 Chr3 28938930 28942534 -
Glsi Glsi14g0742 Chr14 8293673 8297021 -
Gma Gma08g01540 Chr08 13502405 13507439 -
Gso Gso8g1393 Chr8 13320364 13325439 -
Lal Lal20g0476 Chr20 3951371 3955947 +
Lele Lele10g0431 Chr10 3030104 3032869 -
Lele Lele11g0471 Chr11 4542134 4545018 -
Lele Lele12g0845 Chr12 16430787 16433494 +
Lja Lja3g3950 Chr3 77813009 77815797 +
Mibi Mibi01g0898 Chr01 9308869 9311834 +
Phco Phco10g00607 Chr10 6757911 6762910 -
Prci Prci7g1510 Chr7 31128153 31131649 -
Pvu Pvu5g0613 Chr5 8132540 8137694 -