Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1330 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva09g01110 Bva09g01110 . . . . . . . . . . . . . . . . . . . . . . Lal2g0672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1331 . . . . . . . . . . . . . . . . . . . . . . . Bach9g01004 . . Bva09g01112 Bva07g01447 . . . . . . . . . . . . . . . . . . . . . . Lal2g0671 Lal20g0473 . Lal11g1531 . . . . . . . . . . . . . . . . . . Lja3g3942 . . . . . . . . . . . . . . Phco9g01900 . . . Psa1g0140 . Pste1g00249 . . . . . . . Pvu11g1793 . . . . . Spst11g00483 . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1332 . . . . Adu07g02103 . . . . . . . . . . . . . . . Arst7g02668 . . . . . Bva09g01113 Bva07g01446 . . . . . . . . . . . . Gma08g01544 . . . Gso8g1397 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3943 . . . . . . . . . . . . . Phco10g00612 . . . . . . . . . . . . . Pvu5g0620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1333 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva09g01114 Bva07g01445 . . . . . . . . . . . . Gma08g01543 . . . Gso8g1396 . . . . . Lal2g0670 Lal20g0474 . Lal11g1532 . . . . . . . . . . . . . . . . . . Lja3g3944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1334 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1335 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1339 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1330 Chr19 22291067 22301580 -
Bva Bva09g01110 Chr09 5785002 5791434 -
Bva Bva09g01110 Chr09 5785002 5791434 -
Lal Lal2g0672 Chr2 4062526 4069961 +
Vvi Vvi19g1331 Chr19 22323288 22324730 -
Bach Bach9g01004 Chr9 7513885 7515762 -
Bva Bva09g01112 Chr09 5798297 5799784 -
Bva Bva07g01447 Chr07 14560232 14562067 +
Lal Lal2g0671 Chr2 4051945 4053904 +
Lal Lal20g0473 Chr20 3905785 3908552 -
Lal Lal11g1531 Chr11 18458242 18460311 -
Lja Lja3g3942 Chr3 77685104 77686956 -
Phco Phco9g01900 Chr9 43730707 43732585 +
Psa Psa1g0140 Chr1 9078454 9080214 +
Pste Pste1g00249 Chr1 877307 884625 +
Pvu Pvu11g1793 Chr11 44510474 44512873 +
Spst Spst11g00483 Chr11 26576386 26577554 -
Vvi Vvi19g1332 Chr19 22341690 22349741 +
Adu Adu07g02103 Chr07 69777623 69779784 +
Arst Arst7g02668 Chr7 68630080 68632235 +
Bva Bva09g01113 Chr09 5805616 5807464 +
Bva Bva07g01446 Chr07 14552907 14555101 -
Gma Gma08g01544 Chr08 13543939 13548147 -
Gso Gso8g1397 Chr8 13361952 13366145 -
Lja Lja3g3943 Chr3 77724481 77728899 +
Phco Phco10g00612 Chr10 6848322 6853561 -
Pvu Pvu5g0620 Chr5 8290842 8296093 -
Vvi Vvi19g1333 Chr19 22358835 22361459 +
Bva Bva09g01114 Chr09 5815748 5818735 +
Bva Bva07g01445 Chr07 14544076 14546650 -
Gma Gma08g01543 Chr08 13524509 13527125 -
Gso Gso8g1396 Chr8 13342363 13345360 -
Lal Lal2g0670 Chr2 4027320 4029606 -
Lal Lal20g0474 Chr20 3930532 3933873 +
Lal Lal11g1532 Chr11 18473050 18476425 +
Lja Lja3g3944 Chr3 77757255 77759915 +
Vvi Vvi19g1334 Chr19 22379272 22383673 -
Vvi Vvi19g1335 Chr19 22387075 22387389 +
Vvi Vvi19g1336 Chr19 22387977 22388294 +
Vvi Vvi19g1337 Chr19 22390588 22391529 -
Vvi Vvi19g1338 Chr19 22403179 22403322 +
Vvi Vvi19g1339 Chr19 22403825 22405064 +