Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1352 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01433 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto7g1910 . . . . . . . . . . . . . . . . . .
Vvi19g1353 Acco01g3020 . Accr1g02677 . . . . . . . Ahy18g1888 . Aip08g02143 . Alju02g1019 . Amo18g2545 . . . Arst7g02695 . Bach13g00600 . Bisa12g0280 . Bva09g01122 Bva07g01430 . . . . Dere08g0135 . Dod10g0676 . Enph3g0761 . Glsi14g0730 . Gma08g01533 Gma15g02480 . . Gso8g1386 Gso8g1386 . . . . . Lal20g0480 . . . . . . . . . . Lasa1g04601 . Lele09g0461 Lele10g0425 Lele11g0450 Lele12g0852 . . . . Lja3g3957 . . . Mepo6g02628 . Mesa5g01916 . Mibi01g0904 . . . . . Phco10g00510 . Prci7g1504 . . . Pste3g01837 . . . . . . . Pvu5g0522 . . . . . . . . . . Sto7g1912 . . Trre11g03427 . . . . . . . . . . . . . . .
Vvi19g1354 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma08g02200 . . . Gso8g1982 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1356 Acco01g3018 . Accr1g02675 . . . . . . . Ahy18g1894 . Aip08g02146 . Alju02g1022 . Amo18g2549 . . . Arst7g02697 . . . Bisa12g0278 . Bva09g01124 Bva09g01124 . . . . Dere08g0133 . Dod10g0674 . Enph3g0759 . Glsi14g0728 . . Gma15g02485 . . . . . . . . . Lal20g0486 . . . . . . . . . . Lasa1g04599 . Lele09g0459 Lele10g0424 Lele11g0448 Lele12g0855 . . . . Lja3g3960 . . . . . . . Mibi01g0906 . . . . . Phco10g00505 . Prci7g1502 . . . Pste3g01835 . . . . . . . Pvu5g0519 . . . . . . . . . . Sto7g1913 . . . . . . . . . . Vimu4g01620 . . . . . . .
Vvi19g1357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1350 Chr19 22530547 22533239 +
Vvi Vvi19g1351 Chr19 22537945 22541169 +
Vvi Vvi19g1352 Chr19 22546264 22547496 +
Bva Bva07g01433 Chr07 14504900 14506136 -
Sto Sto7g1910 Chr7 24670299 24671417 +
Vvi Vvi19g1353 Chr19 22558906 22573759 +
Acco Acco01g3020 Chr01 47733055 47739814 -
Accr Accr1g02677 Chr1 63317871 63324310 -
Ahy Ahy18g1888 Chr18 92091787 92098436 +
Aip Aip08g02143 Chr08 85241349 85248072 +
Alju Alju02g1019 Chr02 7875758 7882520 +
Amo Amo18g2545 Chr18 101971005 101977880 +
Arst Arst7g02695 Chr7 69351522 69357504 +
Bach Bach13g00600 Chr13 11449766 11455190 -
Bisa Bisa12g0280 Chr12 3839804 3848101 -
Bva Bva09g01122 Chr09 5880339 5886141 +
Bva Bva07g01430 Chr07 14496192 14500833 -
Dere Dere08g0135 Chr08 2743737 2752421 -
Dod Dod10g0676 Chr10 20617322 20624510 -
Enph Enph3g0761 Chr3 28887632 28896413 -
Glsi Glsi14g0730 Chr14 8191874 8200098 -
Gma Gma08g01533 Chr08 13457235 13465440 -
Gma Gma15g02480 Chr15 52335393 52343575 +
Gso Gso8g1386 Chr8 13276236 13284411 -
Gso Gso8g1386 Chr8 13276236 13284411 -
Lal Lal20g0480 Chr20 3973290 3985509 +
Lasa Lasa1g04601 Chr1 757074777 757077959 -
Lele Lele09g0461 Chr09 3394897 3402230 -
Lele Lele10g0425 Chr10 2992303 2998050 -
Lele Lele11g0450 Chr11 4427516 4437529 -
Lele Lele12g0852 Chr12 16462619 16468589 +
Lja Lja3g3957 Chr3 77927336 77940596 +
Mepo Mepo6g02628 Chr6 36230584 36238675 -
Mesa Mesa5g01916 Chr5 30054408 30061502 +
Mibi Mibi01g0904 Chr01 11809017 11815534 +
Phco Phco10g00510 Chr10 5322346 5328933 -
Prci Prci7g1504 Chr7 31034815 31046216 -
Pste Pste3g01837 Chr3 12123061 12131693 -
Pvu Pvu5g0522 Chr5 6010602 6018003 -
Sto Sto7g1912 Chr7 24679234 24690493 +
Trre Trre11g03427 Chr11 46750792 46757671 +
Vvi Vvi19g1354 Chr19 22576087 22581545 +
Vvi Vvi19g1355 Chr19 22654525 22657736 +
Gma Gma08g02200 Chr08 20885467 20887606 +
Gso Gso8g1982 Chr8 20474359 20476916 +
Vvi Vvi19g1356 Chr19 22662601 22670040 -
Acco Acco01g3018 Chr01 47721521 47723782 +
Accr Accr1g02675 Chr1 63306644 63308943 +
Ahy Ahy18g1894 Chr18 92603426 92609204 -
Aip Aip08g02146 Chr08 85656348 85661885 -
Alju Alju02g1022 Chr02 7890012 7892332 -
Amo Amo18g2549 Chr18 102088102 102093983 -
Arst Arst7g02697 Chr7 69449254 69455473 -
Bisa Bisa12g0278 Chr12 3829582 3832358 +
Bva Bva09g01124 Chr09 5890718 5893352 -
Bva Bva09g01124 Chr09 5890718 5893352 -
Dere Dere08g0133 Chr08 2728919 2739527 +
Dod Dod10g0674 Chr10 20606212 20610388 +
Enph Enph3g0759 Chr3 28880244 28882966 +
Glsi Glsi14g0728 Chr14 8183621 8186898 +
Gma Gma15g02485 Chr15 52380647 52384101 +
Lal Lal20g0486 Chr20 4120371 4123803 -
Lasa Lasa1g04599 Chr1 757055336 757058103 +
Lele Lele09g0459 Chr09 3387343 3389587 +
Lele Lele10g0424 Chr10 2983822 2991784 +
Lele Lele11g0448 Chr11 4419315 4421550 +
Lele Lele12g0855 Chr12 16474852 16475477 -
Lja Lja3g3960 Chr3 77957415 77962110 -
Mibi Mibi01g0906 Chr01 11821443 11823568 -
Phco Phco10g00505 Chr10 5264017 5267815 -
Prci Prci7g1502 Chr7 31026417 31029137 +
Pste Pste3g01835 Chr3 12091902 12095677 +
Pvu Pvu5g0519 Chr5 5932187 5936118 -
Sto Sto7g1913 Chr7 24693563 24698084 +
Vimu Vimu4g01620 Chr4 17391155 17395243 -
Vvi Vvi19g1357 Chr19 22672370 22672840 -
Vvi Vvi19g1358 Chr19 22674119 22674794 +
Vvi Vvi19g1359 Chr19 22678798 22680489 +