Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1191 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1192 . . . . . . . . . . . . Aip08g02002 . . . Amo18g2291 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1193 . . . . Adu07g02142 . Aed1g0354 . . . . . . . Alju02g0974 . . . Apr2g0595 . Arst7g02715 . . . Bisa12g0329 . . . . . Cca10g01329 . Dere08g0179 . . . . . Glsi14g0792 . . Gma15g02430 . . . . . . . . . . . . . . . . . . . . Lasa1g04666 . . . . Lele12g0820 . . . . Lja3g3919 . Mal4g1866 . . . . . Mibi01g0865 . Mtr2g2317 . . . Phco10g00576 . . . . . Pste3g01930 . Pte17g00234 . . . . . Pvu5g0588 . . . . . . . Ssu8g1402 . . Sto7g0031 Tpr7g3216 . . . Tsu02g03933 . . . . . . . . . . . Vra5g2335 .
Vvi19g1194 Acco01g3065 . Accr1g02727 . Adu07g02141 . Aed1g0353 . . . . . . . . . . . Apr2g0596 . Arst7g02713 . . . Bisa12g0327 . . . . . Cca10g01330 . Dere08g0177 . . . Enph3g0796 . Glsi14g0790 . . Gma15g02431 . . . . . . . . . . . . . . . . . . . . Lasa1g04665 . Lele09g0497 Lele10g0458 Lele11g0504 . . . . . Lja3g3920 . Mal4g1867 . . . . . . . Mtr2g2316 . . . Phco10g00577 . . . . . Pste3g01927 . Pte17g00229 . . . . . Pvu5g0589 . . . . . Spst5g01650 . Ssu8g1403 . . Sto7g0030 Tpr7g3215 . . . Tsu02g03932 . . . . . Vimu4g01709 . . . . . Vra5g2334 .
Vvi19g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1197 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1190 Chr19 19597761 19598009 -
Vvi Vvi19g1191 Chr19 19618770 19619493 +
Vvi Vvi19g1192 Chr19 19625057 19625664 +
Aip Aip08g02002 Chr08 60349206 60356128 -
Amo Amo18g2291 Chr18 72678366 72681408 +
Vvi Vvi19g1193 Chr19 19626907 19642830 +
Adu Adu07g02142 Chr07 70926245 70930782 -
Aed Aed1g0354 Chr1 5286837 5291617 -
Alju Alju02g0974 Chr02 7345012 7350166 -
Apr Apr2g0595 Chr2 7005557 7010365 +
Arst Arst7g02715 Chr7 69777977 69782962 -
Bisa Bisa12g0329 Chr12 4506609 4513952 -
Cca Cca10g01329 Chr10 18296974 18302937 +
Dere Dere08g0179 Chr08 3274678 3287894 -
Glsi Glsi14g0792 Chr14 9199048 9204999 -
Gma Gma15g02430 Chr15 51506082 51511188 +
Lasa Lasa1g04666 Chr1 765834514 765841842 -
Lele Lele12g0820 Chr12 16209092 16213641 -
Lja Lja3g3919 Chr3 77108674 77114087 +
Mal Mal4g1866 Chr4 35583600 35589725 +
Mibi Mibi01g0865 Chr01 8543972 8548839 -
Mtr Mtr2g2317 Chr2 34989931 34995993 -
Phco Phco10g00576 Chr10 6348774 6353276 +
Pste Pste3g01930 Chr3 13089879 13095009 -
Pte Pte17g00234 Chr17 2855179 2859644 -
Pvu Pvu5g0588 Chr5 7553417 7558427 +
Ssu Ssu8g1402 Chr8 26886042 26890577 +
Sto Sto7g0031 Chr7 325967 331022 -
Tpr Tpr7g3216 Chr7 39898109 39905306 -
Tsu Tsu02g03933 Chr02 45604940 45610318 -
Vra Vra5g2335 Chr5 30162596 30167441 -
Vvi Vvi19g1194 Chr19 19655290 19660257 +
Acco Acco01g3065 Chr01 48223367 48225979 +
Accr Accr1g02727 Chr1 63884444 63886996 +
Adu Adu07g02141 Chr07 70865952 70869050 -
Aed Aed1g0353 Chr1 5281756 5286160 -
Apr Apr2g0596 Chr2 7013082 7017557 +
Arst Arst7g02713 Chr7 69717807 69725094 -
Bisa Bisa12g0327 Chr12 4501322 4504417 -
Cca Cca10g01330 Chr10 18304559 18308888 +
Dere Dere08g0177 Chr08 3269184 3272015 -
Enph Enph3g0796 Chr3 29309544 29311333 +
Glsi Glsi14g0790 Chr14 9192547 9197264 -
Gma Gma15g02431 Chr15 51513431 51518429 +
Lasa Lasa1g04665 Chr1 765699396 765702770 -
Lele Lele09g0497 Chr09 3697303 3700123 +
Lele Lele10g0458 Chr10 3272533 3275454 +
Lele Lele11g0504 Chr11 5047179 5051822 +
Lja Lja3g3920 Chr3 77119749 77123941 +
Mal Mal4g1867 Chr4 35601835 35604758 +
Mtr Mtr2g2316 Chr2 34983956 34988555 -
Phco Phco10g00577 Chr10 6357940 6367101 +
Pste Pste3g01927 Chr3 13076546 13081686 -
Pte Pte17g00229 Chr17 2838219 2843515 -
Pvu Pvu5g0589 Chr5 7561124 7566011 +
Spst Spst5g01650 Chr5 51381229 51392915 +
Ssu Ssu8g1403 Chr8 26905618 26907534 +
Sto Sto7g0030 Chr7 321020 324467 -
Tpr Tpr7g3215 Chr7 39891501 39896820 -
Tsu Tsu02g03932 Chr02 45594542 45601388 -
Vimu Vimu4g01709 Chr4 18596398 18599544 -
Vra Vra5g2334 Chr5 30152083 30156661 -
Vvi Vvi19g1195 Chr19 19682668 19684077 -
Vvi Vvi19g1196 Chr19 19731050 19731340 -
Vvi Vvi19g1197 Chr19 19775640 19777600 +
Vvi Vvi19g1198 Chr19 19783085 19783327 +
Vvi Vvi19g1199 Chr19 19783335 19783547 -