Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1203 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1205 . . . . Adu07g02136 . . . . . . . . . . . . . Apr2g0600 . Arst7g02708 . . . Bisa12g0326 . . . . . Cca10g01334 . Dere08g0176 . . . . . Glsi14g0789 . . Gma15g02432 . . . . . . . . . . . . . . . . . . . . Lasa1g04664 . . . . . . . . . . . Mal4g1868 . . . . . . . Mtr2g2315 . . . Phco10g00578 . Prci7g1562 . . . Pste3g01925 . Pte17g00226 . . . . . Pvu5g0590 . . . . . Spst5g01651 . Ssu8g1404 . . Sto7g0029 Tpr7g3212 . . . Tsu02g03931 . . . . . . . . . . . Vra5g2333 .
Vvi19g1206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1208 . . . Accr1g02719 . . Aed1g0345 . Aev10g1116 . Ahy18g1792 . Aip08g02025 . . . Amo18g2351 . Apr2g0603 Apr5g0827 . Arst7g02012 . Bach9g00987 . Bisa02g2198 . . . . Cca10g01340 . . . Dod10g0723 . . . . Glsi04g2237 . Gma15g02438 . . . . . . Lal9g0594 Lal1g1559 . . Lal1g0633 . . . . . . . . . Lasa1g04782 . . . . . Lele29g1558 . . . . Lja3g4946 Mal4g1874 Mal5g2201 . Mepo1g03100 . . . . Mtr2g2312 Mtr8g1530 . . Phco10g00587 Phco9g01913 . Prci6g2878 . . Pste3g01915 . Pte17g00225 . Pte1g01159 . . . Pvu5g0595 Pvu11g1812 . . . . Spst5g01657 Spst11g00463 Ssu8g1413 . Sto4g0762 . Tpr7g3202 Tpr7g1383 . Trre15g01735 Tsu02g03908 Tsu08g01700 . . . . . Vimu5g00970 . . . Vivi7g00485 Vra5g2332 .
Vvi19g1209 . . . . . . Aed1g0344 . Aev10g1115 . Ahy18g1794 . Aip08g02030 . . . Amo18g2352 . Apr2g0604 . . . . . . . . . . . Cca10g01342 . . . Dod10g0722 . . . . . . Gma15g02439 . . . . . . . . . . . . . . . . . . . . Lasa1g04654 . . . . . . . . . . . Mal4g1875 . . . . . . . Mtr2g2311 . . . Phco10g00591 . . . . . Pste3g01914 . . . . . . . Pvu5g0597 . . . . . Spst5g01659 . Ssu8g1414 . . . Tpr7g3201 . . . Tsu02g03907 . . . . . . . . . . . Vra5g2331 .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1200 Chr19 19813960 19816800 +
Vvi Vvi19g1201 Chr19 19839036 19839533 +
Vvi Vvi19g1202 Chr19 19846308 19847357 +
Vvi Vvi19g1203 Chr19 19860760 19861200 +
Vvi Vvi19g1204 Chr19 19862069 19862551 +
Vvi Vvi19g1205 Chr19 19896979 19903041 +
Adu Adu07g02136 Chr07 70800786 70804386 +
Apr Apr2g0600 Chr2 7043442 7048240 -
Arst Arst7g02708 Chr7 69652845 69656436 +
Bisa Bisa12g0326 Chr12 4496738 4500018 +
Cca Cca10g01334 Chr10 18341870 18348183 -
Dere Dere08g0176 Chr08 3263617 3267246 +
Glsi Glsi14g0789 Chr14 9188597 9192187 +
Gma Gma15g02432 Chr15 51519270 51524493 -
Lasa Lasa1g04664 Chr1 765695841 765698037 +
Mal Mal4g1868 Chr4 35606759 35609655 -
Mtr Mtr2g2315 Chr2 34980218 34983334 +
Phco Phco10g00578 Chr10 6369390 6373456 -
Prci Prci7g1562 Chr7 31467557 31471308 -
Pste Pste3g01925 Chr3 13067614 13075136 +
Pte Pte17g00226 Chr17 2826479 2829691 +
Pvu Pvu5g0590 Chr5 7567410 7571938 -
Spst Spst5g01651 Chr5 51394887 51398801 -
Ssu Ssu8g1404 Chr8 26910526 26915873 -
Sto Sto7g0029 Chr7 317444 319971 +
Tpr Tpr7g3212 Chr7 39878199 39881628 +
Tsu Tsu02g03931 Chr02 45590279 45593653 +
Vra Vra5g2333 Chr5 30138411 30142709 +
Vvi Vvi19g1206 Chr19 19906370 19906777 +
Vvi Vvi19g1207 Chr19 19907421 19915676 +
Vvi Vvi19g1208 Chr19 19949346 19950460 -
Accr Accr1g02719 Chr1 63731655 63732955 -
Aed Aed1g0345 Chr1 5223032 5224724 -
Aev Aev10g1116 Chr10 14912442 14913858 -
Ahy Ahy18g1792 Chr18 65263393 65265121 -
Aip Aip08g02025 Chr08 62961381 62963196 +
Amo Amo18g2351 Chr18 76250337 76252290 +
Apr Apr2g0603 Chr2 7071681 7074353 +
Apr Apr5g0827 Chr5 11969672 11971018 -
Arst Arst7g02012 Chr7 38483517 38485400 +
Bach Bach9g00987 Chr9 7352028 7353380 +
Bisa Bisa02g2198 Chr02 51504867 51506192 -
Cca Cca10g01340 Chr10 18475453 18476930 +
Dod Dod10g0723 Chr10 21893481 21895156 -
Glsi Glsi04g2237 Chr04 75061670 75062947 -
Gma Gma15g02438 Chr15 51598708 51600179 +
Lal Lal9g0594 Chr9 4000268 4001459 -
Lal Lal1g1559 Chr1 17947758 17950246 -
Lal Lal1g0633 Chr1 4087419 4088829 -
Lasa Lasa1g04782 Chr1 787125041 787126816 -
Lele Lele29g1558 Chr29 22425265 22427576 -
Lja Lja3g4946 Chr3 91633963 91635564 -
Mal Mal4g1874 Chr4 35733321 35734715 +
Mal Mal5g2201 Chr5 54382734 54383898 +
Mepo Mepo1g03100 Chr1 35110365 35111872 -
Mtr Mtr2g2312 Chr2 34913425 34915010 -
Mtr Mtr8g1530 Chr8 20406892 20408607 +
Phco Phco10g00587 Chr10 6470850 6472019 +
Phco Phco9g01913 Chr9 43946066 43947575 -
Prci Prci6g2878 Chr6 41716504 41718026 -
Pste Pste3g01915 Chr3 12974039 12975780 -
Pte Pte17g00225 Chr17 2817775 2819346 +
Pte Pte1g01159 Chr1 31797728 31799799 +
Pvu Pvu5g0595 Chr5 7673331 7674993 +
Pvu Pvu11g1812 Chr11 44884218 44886157 -
Spst Spst5g01657 Chr5 51474889 51476099 +
Spst Spst11g00463 Chr11 25527478 25529020 +
Ssu Ssu8g1413 Chr8 27117758 27119025 +
Sto Sto4g0762 Chr4 5296981 5298215 +
Tpr Tpr7g3202 Chr7 39762338 39764162 -
Tpr Tpr7g1383 Chr7 14780174 14781864 -
Trre Trre15g01735 Chr15 13888206 13889394 +
Tsu Tsu02g03908 Chr02 45134213 45136125 -
Tsu Tsu08g01700 Chr08 20415642 20416978 -
Vimu Vimu5g00970 Chr5 14391927 14393104 +
Vivi Vivi7g00485 Chr7 28332874 28334044 +
Vra Vra5g2332 Chr5 30093764 30095250 -
Vvi Vvi19g1209 Chr19 19962428 19968769 -
Aed Aed1g0344 Chr1 5199514 5202159 +
Aev Aev10g1115 Chr10 14881569 14885634 +
Ahy Ahy18g1794 Chr18 65768674 65776897 -
Aip Aip08g02030 Chr08 63448536 63456706 -
Amo Amo18g2352 Chr18 76442698 76450512 -
Apr Apr2g0604 Chr2 7089567 7105444 -
Cca Cca10g01342 Chr10 18500499 18505046 -
Dod Dod10g0722 Chr10 21832443 21836002 +
Gma Gma15g02439 Chr15 51622387 51626860 -
Lasa Lasa1g04654 Chr1 764643091 764645077 +
Mal Mal4g1875 Chr4 35755305 35759882 -
Mtr Mtr2g2311 Chr2 34890884 34897846 +
Phco Phco10g00591 Chr10 6515624 6518791 -
Pste Pste3g01914 Chr3 12949753 12952545 +
Pvu Pvu5g0597 Chr5 7737912 7741507 -
Spst Spst5g01659 Chr5 51494764 51502413 -
Ssu Ssu8g1414 Chr8 27153619 27156811 -
Tpr Tpr7g3201 Chr7 39720204 39728184 +
Tsu Tsu02g03907 Chr02 45102156 45105467 +
Vra Vra5g2331 Chr5 30077795 30079684 +