Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1180 . . . . . . . . Aev10g1133 . Ahy18g1765 . Aip08g01985 . . . Amo18g2266 . . . . . . . . . . . . . . . . . Dod10g0753 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1850 . . . . . . . Mtr2g2326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3226 . . . Tsu02g03963 . . . . . . . . . . . . .
Vvi19g1181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1182 . . . . . . Aed1g0356 . Aev10g1126 . Ahy18g1774 . Aip08g01999 . . . Amo18g2287 . Apr2g0593 Apr5g0830 . . . . . . Bva09g01065 Bva09g01065 . . Cca10g01327 . . . Dod10g0739 . . . . . . Gma15g02427 . . . . . . Lal9g0595 Lal1g1560 Lal2g0686 Lal20g0452 . . . . . . . . . . Lasa1g04669 . . . . . . . . . Lja3g3917 Lja3g4949 Mal4g1861 Mal5g2190 . . . . . . Mtr2g2320 Mtr8g1522 . . . . . . . . Pste3g01935 . Pte17g00241 . . . . . Pvu5g0583 . . . . . . . Ssu8g1400 . . Sto7g0035 Tpr7g3219 Tpr7g1387 . . Tsu02g03938 Tsu08g01693 . . . . . . . . . . Vra5g2349 .
Vvi19g1183 . Acco08g2239 . . . . . . . . . . . . . Alju10g2214 . . . Apr5g0829 . . . Bach9g00980 . Bisa02g2148 . . . . . . . . . . . Enph8g1163 . Glsi04g2160 . . . . . . . . . . . . Lal1g0635 . . . . . . . . . . . . . . . . Lele30g0027 . Lele32g1350 . Lja3g4948 . Mal5g2191 . Mepo1g03111 . Mesa29g03498 . Mibi07g2053 . Mtr8g1523 . . . Phco9g01915 . Prci6g2794 . . . . . . . . . . . Pvu11g1814 . Rops3g02172 . Seca4g07991 . Spst11g00461 . . . . . Tpr7g1386 . Trre15g01731 . Tsu08g01694 . Vian5g00529 . . . Vimu5g00963 . . . Vivi7g00489 . .
Vvi19g1184 . . . . . . . . . . . . . . . . . . . Apr5g0828 . . . Bach9g00981 . . Bva09g01067 Bva09g01067 . . . . . . . . . . . . . . . . . . . . . . . . Lal1g0634 . . . . . . . . . . Lasa4g01538 . . . . . . . . . Lja3g4947 . Mal5g2192 . Mepo1g03110 . . . . . Mtr8g1524 . . . Phco9g01914 . . . . . . . . . . . . . Pvu11g1813 . . . . . Spst11g00462 . . . . . Tpr7g1385 . Trre15g01732 . . . . . . . Vimu5g00966 . . . . . .
Vvi19g1185 Acco01g3068 . Accr1g02732 . . . Aed1g0355 . . . . . . . Alju02g0970 . . . Apr2g0594 . . . . . Bisa12g0331 . . . . . Cca10g01328 . Dere08g0181 . . . Enph3g0800 . Glsi14g0794 . . Gma15g02429 . . . . . . . . . Lal20g0453 . . . . . . . . . . Lasa1g04667 . Lele09g0501 Lele10g0462 Lele11g0507 Lele12g0816 . . . . Lja3g3918 . Mal4g1865 . . . . . Mibi01g0861 . Mtr2g2318 . . . Phco10g00575 . Prci7g1564 . . . Pste3g01931 . . . . . . . Pvu5g0587 . . . . . Spst5g01649 . Ssu8g1401 . . Sto7g0032 Tpr7g3217 . . . Tsu02g03934 . . . . . . . . . . . . .
Vvi19g1186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car01g01838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1189 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1180 Chr19 19354403 19365444 +
Aev Aev10g1133 Chr10 15066056 15070651 +
Ahy Ahy18g1765 Chr18 60542949 60547694 -
Aip Aip08g01985 Chr08 58611908 58616610 -
Amo Amo18g2266 Chr18 70785398 70790222 -
Dod Dod10g0753 Chr10 22601164 22605895 +
Mal Mal4g1850 Chr4 35087954 35092942 -
Mtr Mtr2g2326 Chr2 35134527 35140470 +
Tpr Tpr7g3226 Chr7 39993820 40000101 +
Tsu Tsu02g03963 Chr02 45958174 45961734 +
Vvi Vvi19g1181 Chr19 19433744 19434599 -
Vvi Vvi19g1182 Chr19 19442233 19461020 -
Aed Aed1g0356 Chr1 5307145 5314723 +
Aev Aev10g1126 Chr10 15001250 15006178 +
Ahy Ahy18g1774 Chr18 61957566 61965804 +
Aip Aip08g01999 Chr08 59897905 59906027 +
Amo Amo18g2287 Chr18 71944827 71953033 +
Apr Apr2g0593 Chr2 6977858 6986032 -
Apr Apr5g0830 Chr5 12032759 12047967 +
Bva Bva09g01065 Chr09 5459955 5464834 -
Bva Bva09g01065 Chr09 5459955 5464834 -
Cca Cca10g01327 Chr10 18218440 18228687 -
Dod Dod10g0739 Chr10 22482891 22489600 +
Gma Gma15g02427 Chr15 51444241 51451357 -
Lal Lal9g0595 Chr9 4007300 4013921 +
Lal Lal1g1560 Chr1 17970740 17978217 +
Lal Lal2g0686 Chr2 4185949 4193506 +
Lal Lal20g0452 Chr20 3649045 3656129 -
Lasa Lasa1g04669 Chr1 766483499 766489860 +
Lja Lja3g3917 Chr3 77092749 77099859 -
Lja Lja3g4949 Chr3 91666843 91678992 +
Mal Mal4g1861 Chr4 35426843 35432486 -
Mal Mal5g2190 Chr5 53193977 53199138 -
Mtr Mtr2g2320 Chr2 35043797 35050470 +
Mtr Mtr8g1522 Chr8 20266788 20273355 -
Pste Pste3g01935 Chr3 13151266 13168073 +
Pte Pte17g00241 Chr17 3256157 3257821 +
Pvu Pvu5g0583 Chr5 7399315 7407058 -
Ssu Ssu8g1400 Chr8 26808868 26817846 -
Sto Sto7g0035 Chr7 349341 367579 +
Tpr Tpr7g3219 Chr7 39936278 39943057 +
Tpr Tpr7g1387 Chr7 14845489 14854010 +
Tsu Tsu02g03938 Chr02 45682522 45689200 +
Tsu Tsu08g01693 Chr08 20296356 20301477 -
Vra Vra5g2349 Chr5 30354966 30365029 +
Vvi Vvi19g1183 Chr19 19485408 19493467 +
Acco Acco08g2239 Chr08 37947965 37953736 -
Alju Alju10g2214 Chr10 43170097 43176467 -
Apr Apr5g0829 Chr5 11997508 12023455 -
Bach Bach9g00980 Chr9 7312409 7316188 +
Bisa Bisa02g2148 Chr02 49422242 49431081 -
Enph Enph8g1163 Chr8 19717385 19723600 +
Glsi Glsi04g2160 Chr04 73471453 73477607 -
Lal Lal1g0635 Chr1 4097915 4108217 -
Lele Lele30g0027 Chr30 320502 324735 +
Lele Lele32g1350 Chr32 14477439 14481226 -
Lja Lja3g4948 Chr3 91652582 91659743 -
Mal Mal5g2191 Chr5 53354051 53361208 +
Mepo Mepo1g03111 Chr1 35239886 35247514 -
Mesa Mesa29g03498 Chr29 55106041 55112641 -
Mibi Mibi07g2053 Chr07 43461587 43466820 -
Mtr Mtr8g1523 Chr8 20282418 20289537 +
Phco Phco9g01915 Chr9 43970957 43979472 -
Prci Prci6g2794 Chr6 40599783 40604122 -
Pvu Pvu11g1814 Chr11 44909509 44919840 -
Rops Rops3g02172 Chr3 42300734 42307163 -
Seca Seca4g07991 Chr4 186335497 186345393 +
Spst Spst11g00461 Chr11 25503958 25511268 +
Tpr Tpr7g1386 Chr7 14832567 14839942 -
Trre Trre15g01731 Chr15 13850884 13859309 +
Tsu Tsu08g01694 Chr08 20339913 20347873 +
Vian Vian5g00529 Chr5 16469430 16486510 +
Vimu Vimu5g00963 Chr5 14006871 14012666 +
Vivi Vivi7g00489 Chr7 28615535 28624549 -
Vvi Vvi19g1184 Chr19 19498632 19498883 +
Apr Apr5g0828 Chr5 11988843 11989223 -
Bach Bach9g00981 Chr9 7322020 7322388 +
Bva Bva09g01067 Chr09 5482771 5483371 +
Bva Bva09g01067 Chr09 5482771 5483371 +
Lal Lal1g0634 Chr1 4095034 4096052 -
Lasa Lasa4g01538 Chr4 215758497 215758883 +
Lja Lja3g4947 Chr3 91645292 91645675 -
Mal Mal5g2192 Chr5 53374168 53374548 +
Mepo Mepo1g03110 Chr1 35224793 35225176 -
Mtr Mtr8g1524 Chr8 20297211 20298027 +
Phco Phco9g01914 Chr9 43958084 43958467 -
Pvu Pvu11g1813 Chr11 44897595 44898830 -
Spst Spst11g00462 Chr11 25521432 25521818 +
Tpr Tpr7g1385 Chr7 14828525 14829241 -
Trre Trre15g01732 Chr15 13864073 13864450 +
Vimu Vimu5g00966 Chr5 14089179 14090478 +
Vvi Vvi19g1185 Chr19 19502208 19507458 -
Acco Acco01g3068 Chr01 48235325 48238385 -
Accr Accr1g02732 Chr1 63898838 63901910 -
Aed Aed1g0355 Chr1 5292472 5298115 -
Alju Alju02g0970 Chr02 7325311 7328375 +
Apr Apr2g0594 Chr2 6997670 7003437 +
Bisa Bisa12g0331 Chr12 4522049 4530701 -
Cca Cca10g01328 Chr10 18288410 18293873 +
Dere Dere08g0181 Chr08 3296342 3300614 -
Enph Enph3g0800 Chr3 29321609 29327077 -
Glsi Glsi14g0794 Chr14 9209284 9216291 -
Gma Gma15g02429 Chr15 51483980 51487910 +
Lal Lal20g0453 Chr20 3662482 3667432 +
Lasa Lasa1g04667 Chr1 765929572 765931988 -
Lele Lele09g0501 Chr09 3708461 3722422 -
Lele Lele10g0462 Chr10 3284384 3287535 -
Lele Lele11g0507 Chr11 5059756 5062840 -
Lele Lele12g0816 Chr12 16192179 16195653 +
Lja Lja3g3918 Chr3 77102205 77107514 +
Mal Mal4g1865 Chr4 35578856 35582268 +
Mibi Mibi01g0861 Chr01 8526863 8530144 +
Mtr Mtr2g2318 Chr2 34996687 35001533 -
Phco Phco10g00575 Chr10 6332255 6336104 +
Prci Prci7g1564 Chr7 31477074 31483049 -
Pste Pste3g01931 Chr3 13096957 13101908 -
Pvu Pvu5g0587 Chr5 7522697 7527863 +
Spst Spst5g01649 Chr5 51367681 51380150 +
Ssu Ssu8g1401 Chr8 26868854 26872756 +
Sto Sto7g0032 Chr7 334363 337867 -
Tpr Tpr7g3217 Chr7 39911078 39915742 -
Tsu Tsu02g03934 Chr02 45611830 45616829 -
Vvi Vvi19g1186 Chr19 19530069 19531962 +
Vvi Vvi19g1187 Chr19 19539273 19540048 -
Vvi Vvi19g1188 Chr19 19553944 19558826 +
Car Car01g01838 Chr01 42348926 42353817 -
Vvi Vvi19g1189 Chr19 19593143 19596889 +