Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1171 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1172 . . . . . . . . . . . Ahy13g1882 . Aip03g02087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1173 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1177 . . Accr1g02745 . Adu07g02145 . Aed1g0359 . . . . . . . . . . . Apr2g0589 . Arst7g02720 . . . Bisa12g0340 . Bva09g01063 Bva09g01063 Car01g01841 . Cca10g01324 . Dere08g0190 . . . Enph3g0808 . Glsi14g0801 . . Gma15g02425 . . . . . . Lal9g0583 . . Lal20g0445 . . . . . . . . Lapu5g01226 . . . Lele09g0508 Lele10g0470 Lele11g0514 Lele12g0808 . . . . Lja3g3912 . . . . . . . Mibi01g0852 . . . . . Phco10g00569 . Prci7g1572 . . Psa1g0066 Pste3g01940 . . . . . . . Pvu5g0581 . . . . . Spst5g01643 . Ssu8g1393 . . Sto7g0041 . . . . . . . . . . . . . . . . Vra5g2352 .
Vvi19g1178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g1478 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g1400 . . . Tsu08g01666 . . . . . . . . . . . .
Vvi19g1179 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1170 Chr19 19093051 19093366 +
Vvi Vvi19g1171 Chr19 19094447 19106223 -
Vvi Vvi19g1172 Chr19 19138976 19141891 +
Ahy Ahy13g1882 Chr13 31722923 31728071 -
Aip Aip03g02087 Chr03 30513304 30518284 -
Vvi Vvi19g1173 Chr19 19180148 19180384 -
Vvi Vvi19g1174 Chr19 19190007 19191200 -
Vvi Vvi19g1175 Chr19 19223994 19224697 -
Vvi Vvi19g1176 Chr19 19247829 19265051 -
Vvi Vvi19g1177 Chr19 19293864 19295567 +
Accr Accr1g02745 Chr1 64086372 64088078 -
Adu Adu07g02145 Chr07 71009444 71011832 +
Aed Aed1g0359 Chr1 5347428 5349146 -
Apr Apr2g0589 Chr2 6921677 6925276 +
Arst Arst7g02720 Chr7 69861528 69863905 +
Bisa Bisa12g0340 Chr12 4600924 4602630 +
Bva Bva09g01063 Chr09 5449210 5451572 -
Bva Bva09g01063 Chr09 5449210 5451572 -
Car Car01g01841 Chr01 42388312 42390030 +
Cca Cca10g01324 Chr10 18139266 18141296 +
Dere Dere08g0190 Chr08 3409131 3410837 +
Enph Enph3g0808 Chr3 29385675 29387387 +
Glsi Glsi14g0801 Chr14 9268766 9270478 +
Gma Gma15g02425 Chr15 51415894 51417730 +
Lal Lal9g0583 Chr9 3928234 3929946 -
Lal Lal20g0445 Chr20 3614983 3616710 +
Lapu Lapu5g01226 Chr5 24729514 24731940 +
Lele Lele09g0508 Chr09 3764437 3766140 +
Lele Lele10g0470 Chr10 3336091 3336755 +
Lele Lele11g0514 Chr11 5105602 5107308 +
Lele Lele12g0808 Chr12 16130806 16134446 -
Lja Lja3g3912 Chr3 77056791 77058808 -
Mibi Mibi01g0852 Chr01 8459554 8461260 -
Phco Phco10g00569 Chr10 6237058 6238773 +
Prci Prci7g1572 Chr7 31557128 31559678 +
Psa Psa1g0066 Chr1 4441332 4444558 -
Pste Pste3g01940 Chr3 13193354 13195588 -
Pvu Pvu5g0581 Chr5 7357639 7360544 +
Spst Spst5g01643 Chr5 51258311 51261432 +
Ssu Ssu8g1393 Chr8 26687659 26689374 +
Sto Sto7g0041 Chr7 396587 398293 +
Vra Vra5g2352 Chr5 30439011 30441296 -
Vvi Vvi19g1178 Chr19 19309633 19310536 +
Mtr Mtr8g1478 Chr8 19117117 19118890 -
Tpr Tpr7g1400 Chr7 15054197 15055582 +
Tsu Tsu08g01666 Chr08 19888497 19890182 -
Vvi Vvi19g1179 Chr19 19314488 19314751 +