Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1160 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1161 . . . . . . . . . . . . . . . . . . . . . . . Bach9g00979 . . . Bva07g01477 . . . . . . . . . . . . Gma08g01578 . . . Gso8g1420 . . . . . . . . . . . . . . . . . . Lasa4g01539 . . . . . . . . . . . . . Mepo1g03113 . Mesa29g03502 . . . . . Phac11g02313 . Phco9g01917 . . . . . . . . . Pte17g00239 . . . Pvu11g1815 . Rops3g02173 . Seca4g07990 . . . . . . . . . Trre15g01730 . . . Vian5g00528 . . . Vimu5g00961 . . . . . .
Vvi19g1162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2125 . . . . . . . Mtr8g1467 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g1436 . . . Tsu08g01660 . . . . . . . . . . . .
Vvi19g1164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1165 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1166 . . . . Adu07g02150 . Aed1g0364 . Aev10g1134 . Ahy18g1764 . Aip08g01984 . Alju02g0958 . . . Apr2g0584 . Arst7g02727 . . . Bisa12g0343 . Bva09g01062 Bva09g01062 Car01g01844 . Cca10g01317 . Dere08g0193 . Dod10g0754 . Enph3g0811 . Glsi14g0804 . . Gma15g02420 . . . . . . Lal9g0582 . Lal2g0668 Lal20g0443 . . . . . . . . . . Lasa1g04676 . Lele09g0510 Lele10g0475 Lele11g0516 Lele12g0804 . . . . Lja3g3909 . Mal4g1847 . . . . . Mibi01g0849 . Mtr2g2327 . . . Phco10g00562 . Prci7g1575 . . Psa1g0063 . . Pte17g00242 Pte15g01578 . . . . Pvu5g0576 . . . . . Spst5g01638 . Ssu8g1387 . . Sto7g0043 Tpr7g3227 . . . Tsu02g03964 . . . . . . . . . . . Vra5g2356 .
Vvi19g1167 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01431 . . . . . . . . . . . . Gma08g01534 . . . Gso8g1387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1160 Chr19 18967494 18968195 -
Vvi Vvi19g1161 Chr19 18982768 18983334 +
Bach Bach9g00979 Chr9 7304405 7310361 -
Bva Bva07g01477 Chr07 14731385 14737763 +
Gma Gma08g01578 Chr08 13954438 13961878 -
Gso Gso8g1420 Chr8 13764912 13773431 -
Lasa Lasa4g01539 Chr4 216218319 216225881 +
Mepo Mepo1g03113 Chr1 35293957 35300448 +
Mesa Mesa29g03502 Chr29 55127896 55133729 +
Phac Phac11g02313 Chr11 34199465 34208802 +
Phco Phco9g01917 Chr9 43988228 44001212 +
Pte Pte17g00239 Chr17 3187169 3196475 +
Pvu Pvu11g1815 Chr11 44928234 44937583 +
Rops Rops3g02173 Chr3 42333218 42348383 +
Seca Seca4g07990 Chr4 186244396 186255807 -
Trre Trre15g01730 Chr15 13831713 13843488 -
Vian Vian5g00528 Chr5 16435102 16448010 +
Vimu Vimu5g00961 Chr5 13875201 13876523 -
Vvi Vvi19g1162 Chr19 18990541 18992113 -
Vvi Vvi19g1163 Chr19 18993350 19006745 -
Mal Mal5g2125 Chr5 50229953 50234434 -
Mtr Mtr8g1467 Chr8 18787010 18794043 -
Tpr Tpr7g1436 Chr7 15724962 15731728 +
Tsu Tsu08g01660 Chr08 19844888 19850727 -
Vvi Vvi19g1164 Chr19 19011212 19012279 -
Vvi Vvi19g1165 Chr19 19016466 19019377 -
Vvi Vvi19g1166 Chr19 19037630 19038883 -
Adu Adu07g02150 Chr07 71064366 71066242 -
Aed Aed1g0364 Chr1 5390717 5391829 -
Aev Aev10g1134 Chr10 15078970 15080196 -
Ahy Ahy18g1764 Chr18 60536254 60538615 +
Aip Aip08g01984 Chr08 58605434 58607284 +
Alju Alju02g0958 Chr02 7241875 7243104 +
Apr Apr2g0584 Chr2 6894400 6895859 +
Arst Arst7g02727 Chr7 69915832 69918290 -
Bisa Bisa12g0343 Chr12 4621111 4622367 -
Bva Bva09g01062 Chr09 5438794 5440465 +
Bva Bva09g01062 Chr09 5438794 5440465 +
Car Car01g01844 Chr01 42442328 42444108 -
Cca Cca10g01317 Chr10 18087123 18088662 +
Dere Dere08g0193 Chr08 3429035 3430291 -
Dod Dod10g0754 Chr10 22611225 22612448 -
Enph Enph3g0811 Chr3 29408580 29409882 -
Glsi Glsi14g0804 Chr14 9287697 9288947 -
Gma Gma15g02420 Chr15 51371143 51372393 +
Lal Lal9g0582 Chr9 3917315 3917695 +
Lal Lal2g0668 Chr2 4014581 4015681 +
Lal Lal20g0443 Chr20 3598151 3599134 +
Lasa Lasa1g04676 Chr1 767063742 767064818 -
Lele Lele09g0510 Chr09 3786354 3787613 -
Lele Lele10g0475 Chr10 3354706 3355965 -
Lele Lele11g0516 Chr11 5125926 5127170 -
Lele Lele12g0804 Chr12 16109284 16110543 +
Lja Lja3g3909 Chr3 76978925 76980793 +
Mal Mal4g1847 Chr4 35040522 35041616 +
Mibi Mibi01g0849 Chr01 8440883 8442160 +
Mtr Mtr2g2327 Chr2 35158891 35160666 -
Phco Phco10g00562 Chr10 6193421 6194710 +
Prci Prci7g1575 Chr7 31592726 31594644 -
Psa Psa1g0063 Chr1 3842434 3845195 +
Pte Pte17g00242 Chr17 3266998 3269060 +
Pte Pte15g01578 Chr15 13381632 13383264 -
Pvu Pvu5g0576 Chr5 7320154 7321820 +
Spst Spst5g01638 Chr5 51222646 51223776 +
Ssu Ssu8g1387 Chr8 26596155 26597255 +
Sto Sto7g0043 Chr7 410513 411760 -
Tpr Tpr7g3227 Chr7 40021021 40022763 -
Tsu Tsu02g03964 Chr02 46019114 46020352 -
Vra Vra5g2356 Chr5 30455603 30460596 -
Vvi Vvi19g1167 Chr19 19051554 19052363 +
Bva Bva07g01431 Chr07 14501571 14504012 -
Gma Gma08g01534 Chr08 13467612 13471956 -
Gso Gso8g1387 Chr8 13286459 13290512 -
Vvi Vvi19g1168 Chr19 19075145 19075989 +
Vvi Vvi19g1169 Chr19 19091700 19092203 +